Variant report

Variant	rs12231207
Chromosome Location	chr12:4189922-4189923
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10848976	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10848978	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10848979	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10848983	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10848984	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11062989	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11062992	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11062999	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11063000	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11063003	0.81[AMR][1000 genomes]
rs11063004	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11063007	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11063008	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11063009	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12228949	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12229320	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12230013	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12579541	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12579556	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12579813	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2072497	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2110592	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2160160	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2160161	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2358594	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2358836	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2358837	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2540139	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3889565	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4765762	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4765767	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4765769	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4766207	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4766208	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4766209	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4766211	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs58334161	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59759498	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60789908	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6489518	0.85[EUR][1000 genomes]
rs7136346	0.85[EUR][1000 genomes]
rs741243	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs759306	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7969060	0.84[AMR][1000 genomes]
rs7975418	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9634153	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530520	chr12:3726841-4601757	Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4189800-4201000	Weak transcription	Pancreas	Pancrea

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