Variant report

Variant	rs12231539
Chromosome Location	chr12:84034532-84034533
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10779016	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10862729	0.82[AMR][1000 genomes]
rs10862732	0.84[AMR][1000 genomes]
rs11115937	0.87[AMR][1000 genomes]
rs11115951	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11115954	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11115992	0.82[AMR][1000 genomes]
rs11115996	0.82[AMR][1000 genomes]
rs11533593	0.82[AMR][1000 genomes]
rs11561341	0.84[AMR][1000 genomes]
rs1156937	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1156938	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11832354	0.84[AMR][1000 genomes]
rs11833515	0.84[AMR][1000 genomes]
rs12301047	0.82[AMR][1000 genomes]
rs1397893	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1397894	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1497341	0.87[AMR][1000 genomes]
rs1497348	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1497349	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1511581	0.89[AMR][1000 genomes]
rs1511585	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1603574	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1841344	0.82[AMR][1000 genomes]
rs1841345	0.82[AMR][1000 genomes]
rs1841346	0.82[AMR][1000 genomes]
rs1841347	0.82[AMR][1000 genomes]
rs1858328	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2173190	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2645976	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2667477	0.89[AMR][1000 genomes]
rs324771	0.87[AMR][1000 genomes]
rs3993343	0.82[AMR][1000 genomes]
rs421713	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56172305	0.82[AMR][1000 genomes]
rs68077020	0.82[AMR][1000 genomes]
rs7297591	0.82[AMR][1000 genomes]
rs7301076	0.82[AMR][1000 genomes]
rs7962126	0.82[AMR][1000 genomes]
rs7964886	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs990646	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469496	chr12:84014359-84074475	Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv559562	chr12:84014359-84074475	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv559563	chr12:84017043-84450824	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3372900	chr12:84033421-84038519	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:84033800-84035000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr12:84034000-84035600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr12:84034200-84034800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:84034200-84035000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr12:84034400-84034800	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links