Variant report

Variant	rs12231942
Chromosome Location	chr12:106323956-106323957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1421441	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2761768	chr12:106317265-106326204	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106314600-106324200	Weak transcription	Right Atrium	heart
2	chr12:106317000-106327600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:106317200-106324200	Weak transcription	Psoas Muscle	Psoas
4	chr12:106317200-106325800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr12:106321200-106327600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr12:106322000-106325400	Weak transcription	Esophagus	oesophagus
7	chr12:106322000-106325800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr12:106322200-106327600	Weak transcription	HSMM	muscle
9	chr12:106322600-106324200	Weak transcription	Fetal Muscle Leg	muscle
10	chr12:106323000-106326200	Enhancers	Brain Germinal Matrix	brain
11	chr12:106323200-106325800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr12:106323200-106326800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr12:106323400-106324400	Weak transcription	HSMMtube	muscle
14	chr12:106323400-106324400	Weak transcription	NHEK	skin
15	chr12:106323400-106325200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr12:106323400-106325400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr12:106323600-106324000	Weak transcription	HMEC	breast
18	chr12:106323600-106325000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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