Variant report
| Variant | rs12232011 |
|---|---|
| Chromosome Location | chr12:60226046-60226047 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10431559 | 0.88[ASN][1000 genomes] |
| rs10437957 | 0.83[CEU][hapmap];0.85[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10783999 | 0.83[CEU][hapmap];0.80[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs10877346 | 0.87[ASN][1000 genomes] |
| rs10877347 | 0.88[ASN][1000 genomes] |
| rs10877351 | 0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11173156 | 0.88[AFR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11173181 | 0.86[ASN][1000 genomes] |
| rs11173188 | 0.88[ASN][1000 genomes] |
| rs11173196 | 0.88[ASN][1000 genomes] |
| rs11536188 | 0.88[ASN][1000 genomes] |
| rs12298092 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1795886 | 0.88[CEU][hapmap] |
| rs2706285 | 0.81[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs2706301 | 0.84[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs2711666 | 0.84[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs4337073 | 0.88[ASN][1000 genomes] |
| rs4540857 | 0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4758813 | 0.88[ASN][1000 genomes] |
| rs4758847 | 0.88[ASN][1000 genomes] |
| rs6581280 | 0.81[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7136857 | 0.88[ASN][1000 genomes] |
| rs7298091 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7309233 | 0.88[ASN][1000 genomes] |
| rs7311027 | 0.87[ASN][1000 genomes] |
| rs7311327 | 0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869425 | chr12:59746898-60479741 | Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| 2 | esv3365928 | chr12:60042531-60343212 | Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv899134 | chr12:60141518-60263723 | Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv899135 | chr12:60156046-60228610 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:60225400-60240000 | Weak transcription | H9 Cell Line | embryonic stem cell |
