Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:48306231..48309120-chr4:48316707..48318275,2	K562	blood:
2	chr4:48271185..48273592-chr4:48315743..48318601,2	K562	blood:

Variant related genes	Relation type
ENSG00000135605	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10433724	0.80[AMR][1000 genomes]
rs11732570	0.80[AMR][1000 genomes]
rs13143606	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs170145	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1828297	0.80[AMR][1000 genomes]
rs2353304	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs309883	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs309891	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs309892	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs368292	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs379323	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs430599	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4529022	0.81[AMR][1000 genomes]
rs55656036	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56041079	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56063319	0.80[AMR][1000 genomes]
rs58166553	0.81[AMR][1000 genomes]
rs58372912	0.81[AMR][1000 genomes]
rs59896383	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62309361	0.81[AMR][1000 genomes]
rs62309362	0.80[AMR][1000 genomes]
rs62311478	0.80[AMR][1000 genomes]
rs62311498	0.81[AMR][1000 genomes]
rs6852406	0.81[AMR][1000 genomes]
rs7659044	0.81[AMR][1000 genomes]
rs7665958	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7666809	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482316	chr4:48151953-48338746	Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1006610	chr4:48209294-48415387	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv537085	chr4:48209294-48415387	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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