Variant report

Variant	rs12233914
Chromosome Location	chr4:20297580-20297581
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10516351	0.83[CEU][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10805216	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10938788	0.80[MEX][hapmap];0.81[TSI][hapmap]
rs10938793	0.83[AMR][1000 genomes]
rs10938794	0.83[CEU][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12508158	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12511950	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12646142	0.83[CEU][hapmap];0.92[GIH][hapmap];0.92[MEX][hapmap];0.84[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12648551	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1344849	0.83[CEU][hapmap];0.93[GIH][hapmap];0.92[MEX][hapmap];0.84[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16869521	0.83[CEU][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16869526	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1853386	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3945867	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4358400	0.93[EUR][1000 genomes]
rs4386603	0.93[EUR][1000 genomes]
rs4697157	0.89[AMR][1000 genomes]
rs55911061	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58086451	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61333152	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6447953	0.91[EUR][1000 genomes]
rs66478358	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs66615925	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs66875143	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs66960874	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs66981451	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs67264035	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67506381	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6828506	0.94[CEU][hapmap];0.80[GIH][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs72619155	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7680945	0.92[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878738	chr4:20255306-20300192	Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv878739	chr4:20255306-20307922	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv593792	chr4:20275477-20362716	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv593793	chr4:20282334-20333722	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv878740	chr4:20292239-20333722	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20258200-20299400	Weak transcription	Fetal Stomach	stomach
2	chr4:20278800-20298000	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:20287400-20298200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:20290600-20298000	Weak transcription	Fetal Lung	lung
5	chr4:20291800-20297600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:20291800-20300200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr4:20291800-20319000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr4:20292200-20298000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:20292400-20305200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:20295000-20298200	Weak transcription	Osteobl	bone
11	chr4:20296600-20304000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:20297200-20298200	Weak transcription	NHDF-Ad	bronchial

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