Variant report

Variant	rs12236113
Chromosome Location	chr9:14608986-14608987
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:14607657..14609554-chr9:14615392..14617575,2	K562	blood:
2	chr9:14607927..14609572-chr9:14611159..14613571,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10756587	0.87[CHB][hapmap]
rs10810180	0.84[AMR][1000 genomes]
rs10810185	0.83[ASN][1000 genomes]
rs10961594	0.89[AMR][1000 genomes]
rs10961600	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10961601	0.89[CEU][hapmap];0.89[CHB][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10961617	0.84[ASN][1000 genomes]
rs10961622	0.82[ASN][1000 genomes]
rs10961628	0.80[CHB][hapmap]
rs1134457	0.82[ASN][1000 genomes]
rs1143025	0.83[ASN][1000 genomes]
rs12236525	0.81[ASN][1000 genomes]
rs13290060	0.83[ASN][1000 genomes]
rs13290946	0.83[ASN][1000 genomes]
rs1343706	0.83[ASN][1000 genomes]
rs1578868	0.94[CHB][hapmap]
rs2225163	0.88[CHB][hapmap]
rs2382492	0.87[CHB][hapmap]
rs3765603	0.88[CHB][hapmap];0.82[ASN][1000 genomes]
rs3819003	0.82[CHB][hapmap];0.82[ASN][1000 genomes]
rs4460485	0.82[ASN][1000 genomes]
rs4490946	0.87[CHB][hapmap]
rs7029906	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7032825	0.89[CHB][hapmap]
rs7043425	0.85[AMR][1000 genomes]
rs7873022	0.88[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv831517	chr9:14512924-14738206	Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv613637	chr9:14524438-15011915	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv3362157	chr9:14542189-14791977	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv521363	chr9:14566406-14691897	ZNF genes & repeats Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv3380008	chr9:14573378-14615933	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv892605	chr9:14585052-14709151	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv892606	chr9:14588049-14697022	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv471285	chr9:14589173-14622952	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv892607	chr9:14589173-14622952	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv892608	chr9:14589173-14689088	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv892609	chr9:14589173-14694302	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv613640	chr9:14590805-14616590	ZNF genes & repeats Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv613641	chr9:14590805-14622952	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv613642	chr9:14592180-14639666	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
17	esv2752921	chr9:14593749-14694372	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12236113	ZDHHC21	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14586800-14629800	Weak transcription	Primary T cells from cord blood	blood
2	chr9:14587800-14618400	Weak transcription	HUVEC	blood vessel
3	chr9:14588200-14618800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr9:14594400-14618200	Weak transcription	NH-A	brain
5	chr9:14594800-14633400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr9:14595600-14653600	Weak transcription	NHDF-Ad	bronchial
7	chr9:14596600-14618600	Weak transcription	Adipose Nuclei	Adipose
8	chr9:14596600-14618800	Weak transcription	Left Ventricle	heart
9	chr9:14596600-14618800	Weak transcription	Ovary	ovary
10	chr9:14596600-14618800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr9:14596600-14627200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr9:14596600-14627600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr9:14596600-14629600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr9:14596600-14629800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr9:14596600-14630600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:14596600-14630600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr9:14596600-14630800	Weak transcription	Aorta	Aorta
18	chr9:14596600-14630800	Weak transcription	Fetal Intestine Small	intestine
19	chr9:14596600-14630800	Weak transcription	HSMMtube	muscle
20	chr9:14596600-14634000	Weak transcription	Gastric	stomach
21	chr9:14596600-14653600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr9:14596800-14609600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr9:14596800-14618600	Weak transcription	Liver	Liver
24	chr9:14597000-14610600	Weak transcription	Primary B cells from cord blood	blood
25	chr9:14597000-14618800	Weak transcription	Fetal Intestine Large	intestine
26	chr9:14597000-14655000	Weak transcription	Stomach Smooth Muscle	stomach
27	chr9:14597800-14633600	Weak transcription	Pancreas	Pancrea
28	chr9:14598200-14620800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr9:14598200-14633200	Weak transcription	Fetal Stomach	stomach
30	chr9:14599800-14654000	Weak transcription	Fetal Heart	heart
31	chr9:14601400-14636800	Weak transcription	Small Intestine	intestine
32	chr9:14603000-14609400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr9:14603200-14618600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr9:14603400-14609000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr9:14603800-14618400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr9:14604400-14609400	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr9:14604400-14614400	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr9:14604600-14631000	Weak transcription	GM12878-XiMat	blood
39	chr9:14605600-14630000	Weak transcription	Primary hematopoietic stem cells	blood
40	chr9:14605600-14654800	Weak transcription	HSMM	muscle
41	chr9:14605800-14634000	Weak transcription	Esophagus	oesophagus
42	chr9:14608400-14609800	Strong transcription	Primary B cells from peripheral blood	blood
43	chr9:14608400-14627000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr9:14608800-14610200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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