Variant report

Variant	rs12237487
Chromosome Location	chr9:16205048-16205049
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10962330	0.98[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1108491	0.93[AMR][1000 genomes]
rs4422863	0.82[EUR][1000 genomes]
rs4961668	0.91[AMR][1000 genomes]
rs7856829	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7874278	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv892639	chr9:16190403-16242088	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16197600-16207200	Weak transcription	Ovary	ovary
2	chr9:16201800-16205800	Enhancers	NHDF-Ad	bronchial
3	chr9:16202000-16205200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:16202000-16207200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr9:16203400-16206200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:16203600-16207200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr9:16203600-16213600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr9:16203800-16206600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr9:16203800-16207000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:16204200-16205800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr9:16204400-16207200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:16204400-16207200	Weak transcription	Fetal Lung	lung
13	chr9:16204400-16213600	Weak transcription	Colon Smooth Muscle	Colon
14	chr9:16204600-16205400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr9:16204600-16206800	Weak transcription	HSMMtube	muscle
16	chr9:16204600-16207000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr9:16204600-16207200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr9:16204600-16207200	Weak transcription	Osteobl	bone
19	chr9:16204600-16213200	Weak transcription	NHLF	lung
20	chr9:16204600-16213600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr9:16204800-16207400	Weak transcription	HSMM	muscle
22	chr9:16205000-16205200	Enhancers	Lung	lung
23	chr9:16205000-16205200	ZNF genes & repeats	A549	lung

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