Variant report

Variant	rs12238536
Chromosome Location	chr9:21901263-21901264
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10965165	0.82[ASN][1000 genomes]
rs10965168	0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10965174	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10965175	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11526324	0.87[AMR][1000 genomes]
rs11531660	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11536713	0.87[AMR][1000 genomes]
rs12236681	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12236836	0.83[AMR][1000 genomes]
rs12553901	0.87[AMR][1000 genomes]
rs3802394	0.82[AMR][1000 genomes]
rs4352938	0.85[AMR][1000 genomes]
rs4587423	0.88[AMR][1000 genomes]
rs4977569	0.90[AMR][1000 genomes]
rs4977735	0.82[AMR][1000 genomes]
rs4977736	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4977742	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4977743	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4977744	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4977745	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs56213153	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62556506	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs62556519	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62556520	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7044807	0.90[AMR][1000 genomes]
rs756641	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7865071	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv892745	chr9:21857244-22006273	Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21880400-21901400	Weak transcription	HSMMtube	muscle
2	chr9:21887200-21919000	Weak transcription	Hela-S3	cervix
3	chr9:21891000-21906000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr9:21891200-21901800	Weak transcription	HUVEC	blood vessel
5	chr9:21891200-21903600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:21891600-21903000	Weak transcription	Osteobl	bone
7	chr9:21891800-21907200	Weak transcription	Left Ventricle	heart
8	chr9:21892200-21903000	Weak transcription	NH-A	brain
9	chr9:21892800-21903400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr9:21894200-21908200	Weak transcription	HSMM	muscle
11	chr9:21895400-21909400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:21895800-21903600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:21899800-21903600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr9:21900000-21903400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr9:21900800-21902400	Enhancers	Dnd41	blood
16	chr9:21901000-21903400	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr9:21901000-21908200	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr9:21901000-21908200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr9:21901200-21903000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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