Variant report

Variant	rs12241303
Chromosome Location	chr10:93669621-93669622
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:93667760-93669861	PFSK-1	brain:	n/a	n/a
2	POLR2A	chr10:93667651-93669968	PFSK-1	brain:	n/a	n/a
3	MXI1	chr10:93667572-93669714	SK-N-SH	brain:	n/a	n/a
4	HCFC1	chr10:93668000-93669678	Hela-S3	cervix:	n/a	n/a
5	CTCF	chr10:93667962-93669671	A549	lung:	n/a	n/a
6	REST	chr10:93667662-93669657	H1-neurons	neurons:	n/a	chr10:93668739-93668757

No.	Distal block	Cell Line	Cell type
1	chr10:93666065..93670682-chr10:93680624..93684315,6	K562	blood:
2	chr10:93668102..93670664-chr10:93683184..93685213,2	K562	blood:
3	chr10:93666676..93671284-chr10:93682037..93685018,8	MCF-7	breast:

Variant related genes	Relation type
FGFBP3	TF binding region
ENSG00000095564	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7491	chr10:93626192-93671694	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1798947	chr10:93668341-93674933	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93667200-93669800	Active TSS	HUES48 Cell Line	embryonic stem cell
2	chr10:93667400-93670000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr10:93667600-93669800	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr10:93667600-93669800	Active TSS	K562	blood
5	chr10:93668000-93669800	Active TSS	Cortex derived primary cultured neurospheres	brain
6	chr10:93668800-93669800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:93668800-93669800	Flanking Active TSS	Dnd41	blood
8	chr10:93668800-93670000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr10:93669200-93669800	Active TSS	iPS-18 Cell Line	embryonic stem cell
10	chr10:93669400-93669800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr10:93669400-93669800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr10:93669400-93669800	Flanking Active TSS	Fetal Brain Female	brain
13	chr10:93669400-93669800	Enhancers	Fetal Lung	lung
14	chr10:93669400-93669800	Active TSS	HepG2	liver
15	chr10:93669400-93670000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr10:93669400-93670000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr10:93669400-93682800	Weak transcription	Pancreas	Pancrea
18	chr10:93669600-93669800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:93669600-93669800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr10:93669600-93669800	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr10:93669600-93669800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr10:93669600-93669800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:93669600-93669800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:93669600-93669800	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr10:93669600-93669800	Enhancers	Primary T cells from cord blood	blood
26	chr10:93669600-93669800	Enhancers	Primary hematopoietic stem cells	blood
27	chr10:93669600-93669800	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr10:93669600-93669800	Enhancers	Brain Anterior Caudate	brain
29	chr10:93669600-93669800	Enhancers	Fetal Kidney	kidney
30	chr10:93669600-93669800	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr10:93669600-93670000	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr10:93669600-93670000	Enhancers	Fetal Brain Male	brain
33	chr10:93669600-93670000	Enhancers	Hela-S3	cervix

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