Variant report

Variant	rs12244082
Chromosome Location	chr10:26077330-26077331
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11014736	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11014738	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11014740	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11014741	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11014742	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11812462	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12241354	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12256447	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12256449	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12259322	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12264070	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12265589	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12265595	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12269094	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv947599	chr10:26076303-26081220	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26066200-26082800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr10:26069000-26077600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:26069800-26082800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:26076800-26078400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr10:26077000-26078200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr10:26077000-26078400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr10:26077200-26079000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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