Variant report

Variant	rs12244588
Chromosome Location	chr10:112892136-112892137
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11195436	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4314992	0.81[ASN][1000 genomes]
rs7069564	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs869244	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112889200-112895200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr10:112889800-112897400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:112890400-112895800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:112890800-112895800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr10:112891000-112895800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr10:112891200-112895800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr10:112891200-112896200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr10:112891200-112896400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:112891400-112895200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr10:112891400-112895800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr10:112891400-112896200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr10:112891400-112896200	Weak transcription	Pancreas	Pancrea
13	chr10:112891400-112896800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr10:112891600-112896200	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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