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Variant report
Variant
rs12245656
Chromosome Location
chr10:22555241-22555242
allele
A/C
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:9)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
(count:9 , 50 per page) page:
1
No.
Transcrition factor
Chromosome Location
Cell Line
Cell type
Cell Stage
Matched TF binding sites
1
CEBPB
chr10:22554981-22555506
K562
blood:
n/a
chr10:22555414-22555423
chr10:22555127-22555138
2
CEBPB
chr10:22555110-22555572
Hela-S3
cervix:
n/a
chr10:22555414-22555423
chr10:22555127-22555138
3
CEBPB
chr10:22555055-22555473
H1-hESC
embryonic stem cell:
n/a
chr10:22555414-22555423
chr10:22555127-22555138
4
CEBPB
chr10:22554965-22555552
HepG2
liver:
n/a
chr10:22555414-22555423
chr10:22555127-22555138
5
CEBPB
chr10:22555014-22555578
A549
lung:
n/a
chr10:22555414-22555423
chr10:22555127-22555138
6
CEBPB
chr10:22555099-22555554
MCF-7
breast:
n/a
chr10:22555414-22555423
chr10:22555127-22555138
7
CEBPB
chr10:22555009-22555535
IMR90
lung:
n/a
chr10:22555414-22555423
chr10:22555127-22555138
8
CEBPB
chr10:22554989-22555290
K562
blood:
n/a
chr10:22555127-22555138
9
CTCF
chr10:22555100-22555250
MCF-7
breast:
n/a
n/a
No data
No data
No data
No data
No data
Variant related genes
Relation type
ENSG00000233318
TF binding region
Extended variants information (count: 2 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:2)
rs_ID
r
2
[population]
rs11012909
0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12252482
1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
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