Variant report

Variant	rs12246231
Chromosome Location	chr10:95510117-95510118
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95507841..95511578-chr10:95514882..95519880,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108231	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11187641	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11187642	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12265590	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109312	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3346948	chr10:95421957-95532625	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95503000-95511600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr10:95505400-95511600	Weak transcription	Liver	Liver
3	chr10:95505800-95517600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:95506600-95511800	Weak transcription	Stomach Mucosa	stomach
5	chr10:95506800-95510200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr10:95506800-95511800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr10:95507000-95510800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:95507000-95511000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:95507000-95511000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr10:95507000-95511600	Weak transcription	Brain Substantia Nigra	brain
11	chr10:95507000-95511600	Weak transcription	A549	lung
12	chr10:95507200-95511800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr10:95507600-95511800	Weak transcription	HSMMtube	muscle
14	chr10:95507800-95511800	Weak transcription	NH-A	brain
15	chr10:95508200-95512800	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr10:95508200-95515000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr10:95508400-95511800	Enhancers	H1 Cell Line	embryonic stem cell
18	chr10:95508400-95512200	Enhancers	Fetal Intestine Large	intestine
19	chr10:95508400-95512200	Enhancers	Fetal Intestine Small	intestine
20	chr10:95509200-95511800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr10:95509200-95514600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr10:95509400-95510600	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr10:95509400-95511000	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr10:95509400-95511200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:95509400-95511200	Weak transcription	Brain Anterior Caudate	brain
26	chr10:95509400-95511200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr10:95509400-95511200	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr10:95509400-95511400	Weak transcription	Brain Angular Gyrus	brain
29	chr10:95509400-95511600	Weak transcription	Adipose Nuclei	Adipose
30	chr10:95509400-95511800	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr10:95509400-95511800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr10:95509400-95511800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr10:95509400-95511800	Weak transcription	Right Atrium	heart
34	chr10:95509400-95512000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr10:95509600-95510600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr10:95509600-95510800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr10:95509600-95511000	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr10:95509600-95511000	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr10:95509600-95511600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr10:95509600-95511600	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr10:95509600-95511600	Weak transcription	Fetal Stomach	stomach
42	chr10:95509600-95511600	Weak transcription	Rectal Smooth Muscle	rectum
43	chr10:95509600-95511800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr10:95509600-95511800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr10:95509600-95511800	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr10:95509600-95511800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr10:95509600-95511800	Weak transcription	NHDF-Ad	bronchial
48	chr10:95509600-95511800	Weak transcription	Osteobl	bone
49	chr10:95509600-95512800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr10:95509600-95514800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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