Variant report

Variant	rs12246340
Chromosome Location	chr10:90588165-90588166
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr10:90588131-90588363	MCF10A-Er-Src	breast:	n/a	chr10:90588259-90588268
2	FOS	chr10:90588125-90588323	MCF10A-Er-Src	breast:	n/a	chr10:90588259-90588268
3	FOSL2	chr10:90588165-90588361	HepG2	liver:	n/a	chr10:90588259-90588268
4	JUND	chr10:90588117-90588411	HepG2	liver:	n/a	chr10:90588259-90588268 chr10:90588257-90588268

Variant related genes	Relation type
ANKRD22	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11202857	1.00[AMR][1000 genomes]
rs11202862	1.00[AMR][1000 genomes]
rs11817978	1.00[AMR][1000 genomes]
rs12256354	1.00[AMR][1000 genomes]
rs12259829	1.00[AMR][1000 genomes]
rs7912706	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv1043015	chr10:90467067-90593692	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	nsv467415	chr10:90478483-90600865	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
6	nsv551840	chr10:90478483-90600865	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
7	nsv831942	chr10:90564697-90730352	Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
8	esv3419442	chr10:90587964-90588440	Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90574200-90598400	Weak transcription	Gastric	stomach
2	chr10:90578000-90607200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:90578400-90591600	Weak transcription	Fetal Stomach	stomach
4	chr10:90578600-90592600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr10:90578600-90611200	Weak transcription	Esophagus	oesophagus
6	chr10:90579200-90591600	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr10:90582600-90591600	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr10:90583600-90592800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr10:90585400-90588400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr10:90585400-90588400	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr10:90585600-90590400	Weak transcription	GM12878-XiMat	blood
12	chr10:90586400-90589400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:90587000-90588800	Weak transcription	Fetal Thymus	thymus
14	chr10:90587000-90589400	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr10:90587000-90590400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr10:90587000-90590400	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr10:90587000-90590400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr10:90587000-90590400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr10:90587000-90591000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr10:90587000-90591600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr10:90587200-90588800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr10:90587400-90590400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr10:90587600-90588800	Enhancers	Hela-S3	cervix
24	chr10:90587600-90590400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr10:90587800-90588400	Weak transcription	Primary T cells from cord blood	blood
26	chr10:90587800-90588800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:90587800-90588800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr10:90587800-90589000	Enhancers	NHDF-Ad	bronchial
29	chr10:90587800-90589200	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr10:90588000-90588800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr10:90588000-90590400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr10:90588000-90590400	Weak transcription	Rectal Mucosa Donor 31	rectum

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