Variant report

Variant	rs12247061
Chromosome Location	chr10:18824633-18824634
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10764584	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1042073	chr10:18806900-18838303	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv34545	chr10:18821185-18908294	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18792400-18825400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr10:18799800-18825200	Weak transcription	Colonic Mucosa	Colon
3	chr10:18800200-18826800	Weak transcription	Brain Substantia Nigra	brain
4	chr10:18800400-18827000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:18802000-18825000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:18802600-18828000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr10:18802600-18828200	Weak transcription	Lung	lung
8	chr10:18807200-18826800	Weak transcription	Brain Hippocampus Middle	brain
9	chr10:18807400-18828000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr10:18808000-18828000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:18808400-18827000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr10:18808800-18825400	Weak transcription	Fetal Brain Female	brain
13	chr10:18809000-18827000	Weak transcription	Small Intestine	intestine
14	chr10:18810400-18828000	Weak transcription	Brain Angular Gyrus	brain
15	chr10:18810600-18827000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr10:18810600-18828200	Weak transcription	Aorta	Aorta
17	chr10:18810800-18825400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:18810800-18828000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr10:18811000-18825400	Weak transcription	Right Ventricle	heart
20	chr10:18811000-18826800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr10:18812400-18825200	Weak transcription	Brain Anterior Caudate	brain
22	chr10:18812400-18827000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr10:18812800-18827000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:18814000-18828000	Weak transcription	Esophagus	oesophagus
25	chr10:18814600-18825200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr10:18814600-18827000	Weak transcription	Thymus	Thymus
27	chr10:18814800-18825200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr10:18814800-18825400	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr10:18814800-18827600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr10:18815000-18826800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr10:18815200-18825400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr10:18815200-18843600	Weak transcription	A549	lung
33	chr10:18815800-18828000	Weak transcription	K562	blood
34	chr10:18816400-18830400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr10:18816400-18841800	Strong transcription	Liver	Liver
36	chr10:18816800-18829600	Weak transcription	HSMMtube	muscle
37	chr10:18817400-18829000	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr10:18818200-18825800	Weak transcription	Psoas Muscle	Psoas
39	chr10:18818600-18825200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr10:18818600-18825200	Weak transcription	Pancreas	Pancrea
41	chr10:18818800-18828000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr10:18818800-18828400	Weak transcription	Fetal Thymus	thymus
43	chr10:18819000-18825400	Weak transcription	Brain Germinal Matrix	brain
44	chr10:18819200-18825600	Weak transcription	Primary hematopoietic stem cells	blood
45	chr10:18819200-18826800	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr10:18819200-18827000	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr10:18819400-18825000	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr10:18819400-18827000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr10:18819600-18827400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr10:18819600-18828000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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