Variant report

Variant	rs12247363
Chromosome Location	chr10:25258560-25258561
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72782215	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053278	chr10:25140776-25269093	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3377854	chr10:25254646-25258844	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25249200-25258600	Weak transcription	Brain Anterior Caudate	brain
2	chr10:25249200-25258600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr10:25249200-25262200	Weak transcription	Fetal Stomach	stomach
4	chr10:25249200-25263800	Weak transcription	Ovary	ovary
5	chr10:25251000-25263800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:25253200-25262000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:25253200-25264000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr10:25256400-25264400	Weak transcription	Gastric	stomach
9	chr10:25257000-25259000	Weak transcription	Fetal Kidney	kidney
10	chr10:25257600-25258600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr10:25257800-25259600	Enhancers	Fetal Muscle Leg	muscle
12	chr10:25258200-25259400	Weak transcription	Fetal Muscle Trunk	muscle
13	chr10:25258200-25259400	Enhancers	Osteobl	bone
14	chr10:25258200-25259800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:25258200-25260800	Enhancers	NHDF-Ad	bronchial
16	chr10:25258400-25259400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:25258400-25259600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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