Variant report

Variant	rs12248329
Chromosome Location	chr10:45731302-45731303
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12252532	1.00[ASN][1000 genomes]
rs12266631	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12266830	0.87[ASN][1000 genomes]
rs17157784	1.00[CEU][hapmap]
rs56098506	0.87[ASN][1000 genomes]
rs7095705	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2750897	chr10:45550145-45820136	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv895105	chr10:45636867-45928822	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	esv2595492	chr10:45728107-45732276	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3314796	chr10:45728447-45731877	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1971984	chr10:45728592-45731834	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3314774	chr10:45728624-45731754	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv3314807	chr10:45728673-45731728	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3314785	chr10:45728754-45731647	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3314818	chr10:45728768-45731646	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv19142	chr10:45728819-45731678	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45730400-45732200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:45730800-45731800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr10:45730800-45731800	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr10:45730800-45731800	Enhancers	Stomach Mucosa	stomach
5	chr10:45730800-45731800	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr10:45731000-45731600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:45731000-45731800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:45731200-45731600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:45731200-45731600	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr10:45731200-45731600	Enhancers	Brain Substantia Nigra	brain
11	chr10:45731200-45731800	Enhancers	Brain Cingulate Gyrus	brain
12	chr10:45731200-45732000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:45731200-45732000	Enhancers	Muscle Satellite Cultured Cells	--
14	chr10:45731200-45732000	Enhancers	HMEC	breast
15	chr10:45731200-45732000	Flanking Active TSS	HUVEC	blood vessel
16	chr10:45731200-45732000	Enhancers	Osteobl	bone

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links