Variant report

Variant	rs12250578
Chromosome Location	chr10:93140548-93140549
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11186546	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11186547	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11498668	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12241018	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12241262	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12242983	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12248844	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12250544	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12264143	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55973562	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6583769	0.82[CEU][hapmap]
rs7076396	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7083170	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72815477	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72815478	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72815484	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93137000-93140600	Weak transcription	Pancreas	Pancrea
2	chr10:93137000-93141000	Weak transcription	Aorta	Aorta
3	chr10:93138800-93140600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:93138800-93141000	Weak transcription	HMEC	breast
5	chr10:93139000-93140600	Weak transcription	NH-A	brain
6	chr10:93139800-93140800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr10:93139800-93141600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:93140000-93140600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:93140000-93141600	Enhancers	Fetal Thymus	thymus
10	chr10:93140000-93141800	Enhancers	Left Ventricle	heart
11	chr10:93140000-93145600	Enhancers	Fetal Brain Male	brain
12	chr10:93140200-93141600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:93140200-93141600	Enhancers	Placenta Amnion	Placenta Amnion
14	chr10:93140400-93140600	Enhancers	Dnd41	blood
15	chr10:93140400-93141200	Enhancers	Primary T cells from cord blood	blood
16	chr10:93140400-93141600	Enhancers	K562	blood
17	chr10:93140400-93141800	Bivalent Enhancer	Fetal Heart	heart
18	chr10:93140400-93142400	Enhancers	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links