Variant report

Variant	rs12252913
Chromosome Location	chr10:49833612-49833613
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11101360	1.00[AMR][1000 genomes]
rs11101379	1.00[AMR][1000 genomes]
rs12247045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12258201	1.00[AMR][1000 genomes]
rs12263105	1.00[AMR][1000 genomes]
rs17011197	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49813400-49844200	Weak transcription	Pancreas	Pancrea
2	chr10:49828800-49841400	Weak transcription	Aorta	Aorta
3	chr10:49831000-49834400	Enhancers	Primary B cells from peripheral blood	blood
4	chr10:49831000-49835800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:49831200-49834200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:49831400-49835600	Enhancers	HUVEC	blood vessel
7	chr10:49831600-49833800	Enhancers	NHDF-Ad	bronchial
8	chr10:49831600-49834600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:49831600-49843400	Weak transcription	Right Atrium	heart
10	chr10:49831800-49835000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr10:49832000-49834200	Enhancers	NHLF	lung
12	chr10:49832200-49834000	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr10:49832400-49842000	Weak transcription	Brain Substantia Nigra	brain
14	chr10:49833400-49834000	Enhancers	GM12878-XiMat	blood
15	chr10:49833400-49834200	Enhancers	Primary B cells from cord blood	blood
16	chr10:49833600-49834600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr10:49833600-49839800	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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