Variant report

Variant	rs12253656
Chromosome Location	chr10:45948214-45948215
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45937636..45940584-chr10:45947625..45949298,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000012779	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12248277	1.00[AFR][1000 genomes]
rs17157784	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv895107	chr10:45850300-45953767	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv895108	chr10:45878908-46224333	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv895109	chr10:45882741-46210665	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv895110	chr10:45912771-45953767	Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv1043536	chr10:45915941-46076235	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45916600-45949200	Weak transcription	Gastric	stomach
2	chr10:45925000-45949200	Weak transcription	Lung	lung
3	chr10:45928800-45951000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr10:45929200-45951600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr10:45934000-45951200	Weak transcription	Esophagus	oesophagus
6	chr10:45938200-45948600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr10:45938600-45967200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:45938600-45967200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:45939600-45949200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:45940000-45948600	Weak transcription	Fetal Stomach	stomach
11	chr10:45941000-45948600	Weak transcription	Fetal Intestine Small	intestine
12	chr10:45941000-45949200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr10:45941200-45949600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr10:45941400-45948600	Weak transcription	Left Ventricle	heart
15	chr10:45941400-45948800	Weak transcription	Right Ventricle	heart
16	chr10:45941400-45949200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr10:45941600-45949400	Weak transcription	Brain Angular Gyrus	brain
18	chr10:45941600-45949600	Weak transcription	Brain Substantia Nigra	brain
19	chr10:45941600-45950400	Weak transcription	Brain Hippocampus Middle	brain
20	chr10:45941800-45949400	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr10:45941800-45951000	Weak transcription	Placenta	Placenta
22	chr10:45941800-45951600	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr10:45942000-45949400	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr10:45942000-45951800	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr10:45942400-45950600	Weak transcription	Colon Smooth Muscle	Colon
26	chr10:45942800-45948400	Weak transcription	Fetal Muscle Trunk	muscle
27	chr10:45942800-45953200	Weak transcription	Spleen	Spleen
28	chr10:45943000-45948600	Weak transcription	HSMMtube	muscle
29	chr10:45943000-45952800	Weak transcription	Primary B cells from cord blood	blood
30	chr10:45943200-45948400	Weak transcription	Pancreas	Pancrea
31	chr10:45943200-45955000	Weak transcription	Colonic Mucosa	Colon
32	chr10:45943200-45965400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr10:45943400-45954000	Weak transcription	K562	blood
34	chr10:45943600-45948400	Weak transcription	Fetal Muscle Leg	muscle
35	chr10:45943600-45949200	Weak transcription	Right Atrium	heart
36	chr10:45945600-45948400	Weak transcription	Primary hematopoietic stem cells	blood
37	chr10:45945600-45951000	Weak transcription	Thymus	Thymus
38	chr10:45945800-45948600	Enhancers	Primary neutrophils fromperipheralblood	blood
39	chr10:45945800-45950800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr10:45946200-45954400	Weak transcription	Fetal Brain Female	brain
41	chr10:45946400-45949400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:45946400-45949400	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr10:45946400-45951400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr10:45946800-45948400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr10:45946800-45948600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr10:45946800-45952600	Weak transcription	Fetal Lung	lung
47	chr10:45947000-45948600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr10:45947000-45950200	Weak transcription	Fetal Intestine Large	intestine
49	chr10:45947000-45950800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr10:45947000-45951200	Weak transcription	Rectal Mucosa Donor 31	rectum

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