Variant report

Variant	rs12253733
Chromosome Location	chr10:112560341-112560342
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:112558296..112560481-chr10:112630918..112633335,2	MCF-7	breast:
2	chr10:112559443..112561037-chr10:112563760..112565713,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000203497	Chromatin interaction
ENSG00000150593	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11195369	1.00[EUR][1000 genomes]
rs61862947	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045608	chr10:112524813-112677557	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1041758	chr10:112552897-112677557	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112540800-112562400	Weak transcription	Gastric	stomach
2	chr10:112546600-112562400	Weak transcription	Esophagus	oesophagus
3	chr10:112546600-112563800	Weak transcription	Lung	lung
4	chr10:112550200-112561600	Weak transcription	GM12878-XiMat	blood
5	chr10:112551600-112562000	Weak transcription	Fetal Intestine Small	intestine
6	chr10:112553800-112561800	Weak transcription	Fetal Kidney	kidney
7	chr10:112554800-112562000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr10:112555000-112561200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr10:112555200-112561600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:112555200-112561800	Weak transcription	Colon Smooth Muscle	Colon
11	chr10:112555200-112562000	Weak transcription	Psoas Muscle	Psoas
12	chr10:112555200-112562000	Weak transcription	Right Atrium	heart
13	chr10:112555200-112562200	Weak transcription	Fetal Muscle Leg	muscle
14	chr10:112555200-112562400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr10:112555400-112561800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr10:112555400-112562000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr10:112555800-112563800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:112555800-112563800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr10:112557200-112560800	Genic enhancers	Fetal Heart	heart
20	chr10:112557200-112560800	Strong transcription	Skeletal Muscle Female	skeletal muscle
21	chr10:112557200-112561600	Strong transcription	HSMMtube	muscle
22	chr10:112557400-112560800	Strong transcription	Skeletal Muscle Male	skeletal muscle
23	chr10:112557400-112563600	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr10:112557600-112563800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:112558000-112570200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr10:112558000-112578400	Weak transcription	Aorta	Aorta
27	chr10:112559400-112562200	Weak transcription	HSMM	muscle
28	chr10:112559400-112567200	Weak transcription	Right Ventricle	heart
29	chr10:112560200-112562200	Weak transcription	Left Ventricle	heart
30	chr10:112560200-112562800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr10:112560200-112563800	Weak transcription	K562	blood
32	chr10:112560200-112564000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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