Variant report

Variant	rs12254977
Chromosome Location	chr10:112565797-112565798
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:112564097..112567793-chr10:112569786..112571719,3	MCF-7	breast:
2	chr10:112524248..112526059-chr10:112564369..112566473,2	K562	blood:
3	chr10:112563768..112566237-chr10:112662611..112664819,2	K562	blood:
4	chr10:112563375..112566130-chr10:112568241..112569894,2	MCF-7	breast:
5	chr10:112563889..112566843-chr10:112632108..112634836,3	MCF-7	breast:
6	chr10:112065247..112068182-chr10:112564136..112566430,2	MCF-7	breast:
7	chr10:112563350..112568484-chr10:112581268..112585698,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000203867	Chromatin interaction
ENSG00000214413	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11195333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045608	chr10:112524813-112677557	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1041758	chr10:112552897-112677557	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv24150	chr10:112563598-112568976	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112558000-112570200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:112558000-112578400	Weak transcription	Aorta	Aorta
3	chr10:112559400-112567200	Weak transcription	Right Ventricle	heart
4	chr10:112562200-112565800	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr10:112562400-112566400	Enhancers	Esophagus	oesophagus
6	chr10:112562800-112576800	Weak transcription	Psoas Muscle	Psoas
7	chr10:112563000-112572800	Enhancers	Fetal Heart	heart
8	chr10:112564000-112566200	Weak transcription	HSMMtube	muscle
9	chr10:112564000-112581600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:112564200-112566800	Weak transcription	Fetal Muscle Leg	muscle
11	chr10:112564200-112566800	Weak transcription	Right Atrium	heart
12	chr10:112564200-112566800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr10:112564200-112567800	Weak transcription	Gastric	stomach
14	chr10:112564200-112567800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr10:112564200-112567800	Weak transcription	Spleen	Spleen
16	chr10:112564200-112568600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr10:112564200-112570400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr10:112564200-112572000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr10:112564200-112572200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr10:112564200-112572400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr10:112564200-112572600	Weak transcription	K562	blood
22	chr10:112564200-112575000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr10:112564200-112579200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:112564400-112567800	Weak transcription	Fetal Intestine Small	intestine
25	chr10:112564400-112571600	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr10:112564600-112566400	Enhancers	Primary T cells from cord blood	blood
27	chr10:112564800-112567800	Weak transcription	Fetal Intestine Large	intestine
28	chr10:112564800-112570200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr10:112565000-112567800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr10:112565400-112576000	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr10:112565600-112566200	Weak transcription	Left Ventricle	heart
32	chr10:112565600-112567200	Weak transcription	Pancreas	Pancrea
33	chr10:112565600-112567400	Weak transcription	Stomach Mucosa	stomach
34	chr10:112565600-112567600	Weak transcription	Colonic Mucosa	Colon
35	chr10:112565600-112567800	Weak transcription	Duodenum Mucosa	Duodenum
36	chr10:112565600-112567800	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr10:112565600-112568600	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr10:112565600-112569400	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr10:112565600-112574800	Weak transcription	Colon Smooth Muscle	Colon

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