Variant report

Variant	rs12255610
Chromosome Location	chr10:56028635-56028636
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10218915	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs10400005	1.00[JPT][hapmap]
rs10825275	1.00[JPT][hapmap]
rs10825277	1.00[JPT][hapmap]
rs10825278	1.00[JPT][hapmap]
rs10825285	1.00[JPT][hapmap]
rs11004139	1.00[JPT][hapmap]
rs11004148	1.00[CEU][hapmap]
rs11004151	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs11004166	1.00[CEU][hapmap]
rs11004175	1.00[CEU][hapmap]
rs11004179	1.00[JPT][hapmap]
rs11004181	1.00[JPT][hapmap]
rs11004183	0.88[LWK][hapmap];0.94[YRI][hapmap]
rs11004185	1.00[JPT][hapmap];0.84[LWK][hapmap];0.94[YRI][hapmap]
rs12240793	0.89[EUR][1000 genomes]
rs12240800	0.89[EUR][1000 genomes]
rs12242872	1.00[CEU][hapmap]
rs12245058	1.00[CEU][hapmap]
rs12245249	1.00[CEU][hapmap]
rs12248220	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12250056	0.89[EUR][1000 genomes]
rs12250885	1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[ASN][1000 genomes]
rs12252710	0.89[EUR][1000 genomes]
rs12252904	0.89[EUR][1000 genomes]
rs12258533	1.00[JPT][hapmap]
rs12260244	1.00[CEU][hapmap]
rs12260476	1.00[CEU][hapmap]
rs12261438	1.00[CEU][hapmap]
rs12261807	0.89[EUR][1000 genomes]
rs12268918	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7069137	1.00[CEU][hapmap]
rs7077036	1.00[EUR][1000 genomes]
rs7078086	1.00[JPT][hapmap];0.89[YRI][hapmap]
rs7086633	1.00[CEU][hapmap]
rs7090842	1.00[CEU][hapmap]
rs713274	1.00[CEU][hapmap]
rs7893562	1.00[JPT][hapmap]
rs7893808	1.00[JPT][hapmap]
rs7896210	1.00[CEU][hapmap]
rs7899424	0.89[EUR][1000 genomes]
rs7899428	0.89[EUR][1000 genomes]
rs7902567	0.89[EUR][1000 genomes]
rs7902932	0.89[EUR][1000 genomes]
rs7906179	0.89[EUR][1000 genomes]
rs7910314	1.00[CEU][hapmap]
rs7911444	1.00[CEU][hapmap]
rs7913738	0.89[EUR][1000 genomes]
rs7915325	0.89[EUR][1000 genomes]
rs7915552	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs7918079	0.89[EUR][1000 genomes]
rs7919046	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs7923915	1.00[JPT][hapmap]
rs9804255	1.00[JPT][hapmap];0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870252	chr10:55823123-56029435	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv948730	chr10:55845301-56093271	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2829924	chr10:55906112-56038831	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv20105	chr10:55939729-56047721	ZNF genes & repeats Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1053832	chr10:56022197-56061600	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv2753511	chr10:56022197-56153636	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links