Variant report

Variant	rs12256032
Chromosome Location	chr10:50134298-50134299
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12248022	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12268813	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2663048	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2663059	1.00[EUR][1000 genomes]
rs2671707	1.00[EUR][1000 genomes]
rs2943249	1.00[EUR][1000 genomes]
rs7392839	1.00[EUR][1000 genomes]
rs7393385	1.00[EUR][1000 genomes]
rs7899092	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7904326	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50121000-50134800	Weak transcription	Spleen	Spleen
2	chr10:50121000-50155800	Weak transcription	Primary T cells from cord blood	blood
3	chr10:50124800-50134400	Weak transcription	GM12878-XiMat	blood
4	chr10:50125400-50154400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr10:50127800-50147000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr10:50127800-50150400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:50127800-50150600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr10:50130200-50143000	Strong transcription	Primary B cells from peripheral blood	blood
9	chr10:50130800-50143600	Strong transcription	Primary B cells from cord blood	blood
10	chr10:50132400-50134400	Weak transcription	Fetal Lung	lung
11	chr10:50133000-50139000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr10:50133400-50134400	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr10:50133800-50138600	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr10:50134000-50136200	Enhancers	Fetal Muscle Leg	muscle
15	chr10:50134000-50136800	Enhancers	Fetal Muscle Trunk	muscle
16	chr10:50134200-50134400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr10:50134200-50136200	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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