The 2.0 version of rSNPBase

Variant report

Variant rs12256339
Chromosome Location chr10:97109652-97109653
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:80 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:97070400-97139600 Weak transcription Fetal Brain Male brain
2 chr10:97087800-97115400 Weak transcription Colonic Mucosa Colon
3 chr10:97088000-97110600 Weak transcription Duodenum Mucosa Duodenum
4 chr10:97094600-97118000 Weak transcription HSMM muscle
5 chr10:97095000-97110600 Weak transcription Rectal Mucosa Donor 31 rectum
6 chr10:97095000-97115200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
7 chr10:97096400-97110600 Weak transcription H9 Cell Line embryonic stem cell
8 chr10:97096600-97110600 Weak transcription iPS-15b Cell Line embryonic stem cell
9 chr10:97096800-97110600 Weak transcription Psoas Muscle Psoas
10 chr10:97097800-97110600 Weak transcription Right Atrium heart
11 chr10:97097800-97116000 Weak transcription Spleen Spleen
12 chr10:97099200-97110600 Weak transcription Lung lung
13 chr10:97099200-97110800 Weak transcription Fetal Intestine Small intestine
14 chr10:97099200-97113400 Weak transcription Ovary ovary
15 chr10:97099200-97115200 Weak transcription Esophagus oesophagus
16 chr10:97099200-97129200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
17 chr10:97099400-97110000 Weak transcription HMEC breast
18 chr10:97099400-97110200 Weak transcription Brain Hippocampus Middle brain
19 chr10:97099400-97111000 Weak transcription Brain Substantia Nigra brain
20 chr10:97102200-97136400 Weak transcription Fetal Kidney kidney
21 chr10:97103400-97110400 Strong transcription Colon Smooth Muscle Colon
22 chr10:97103400-97110600 Strong transcription Brain Anterior Caudate brain
23 chr10:97103400-97118000 Strong transcription Fetal Brain Female brain
24 chr10:97105000-97118200 Strong transcription Aorta Aorta
25 chr10:97105400-97110400 Weak transcription Fetal Intestine Large intestine
26 chr10:97105600-97110200 Weak transcription Brain Inferior Temporal Lobe brain
27 chr10:97105800-97110800 Enhancers HepG2 liver
28 chr10:97106200-97110000 Weak transcription Brain Germinal Matrix brain
29 chr10:97106400-97110600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
30 chr10:97106800-97112400 Weak transcription GM12878-XiMat blood
31 chr10:97106800-97114200 Weak transcription HUES64 Cell Line embryonic stem cell
32 chr10:97107000-97110000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr10:97107000-97110200 Weak transcription A549 lung
34 chr10:97107000-97110400 Weak transcription iPS-18 Cell Line embryonic stem cell
35 chr10:97107000-97110600 Weak transcription Right Ventricle heart
36 chr10:97107000-97115600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
37 chr10:97107200-97110200 Weak transcription NHEK skin
38 chr10:97107200-97110400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr10:97107200-97113600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
40 chr10:97107200-97113600 Weak transcription iPS-20b Cell Line embryonic stem cell
41 chr10:97107200-97120200 Weak transcription ES-I3 Cell Line embryonic stem cell
42 chr10:97107200-97151800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
43 chr10:97107600-97110600 Weak transcription HUES6 Cell Line embryonic stem cell
44 chr10:97107600-97114000 Weak transcription HUES48 Cell Line embryonic stem cell
45 chr10:97107600-97116000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
46 chr10:97107600-97116600 Genic enhancers Adipose Nuclei Adipose
47 chr10:97107600-97119800 Strong transcription Fetal Stomach stomach
48 chr10:97107800-97110600 Weak transcription Pancreas Pancrea
49 chr10:97107800-97115000 Weak transcription H1 Cell Line embryonic stem cell
50 chr10:97107800-97115200 Strong transcription Left Ventricle heart

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Last update: Aug 31, 2015