Variant report

Variant	rs12257189
Chromosome Location	chr10:56034756-56034757
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11004150	1.00[EUR][1000 genomes]
rs12240782	0.86[YRI][hapmap]
rs12243844	1.00[MEX][hapmap]
rs16915135	1.00[EUR][1000 genomes]
rs16937917	1.00[MEX][hapmap]
rs2102356	1.00[MEX][hapmap]
rs2891516	1.00[EUR][1000 genomes]
rs4454622	1.00[EUR][1000 genomes]
rs61372192	1.00[EUR][1000 genomes]
rs73249946	1.00[EUR][1000 genomes]
rs73251609	1.00[EUR][1000 genomes]
rs73251611	1.00[EUR][1000 genomes]
rs73251614	1.00[EUR][1000 genomes]
rs73251616	1.00[EUR][1000 genomes]
rs73251618	1.00[EUR][1000 genomes]
rs73251620	1.00[EUR][1000 genomes]
rs73251622	1.00[EUR][1000 genomes]
rs73251624	1.00[EUR][1000 genomes]
rs73251625	1.00[EUR][1000 genomes]
rs73251629	1.00[EUR][1000 genomes]
rs73251630	1.00[EUR][1000 genomes]
rs74136137	1.00[EUR][1000 genomes]
rs7894819	1.00[EUR][1000 genomes]
rs7917490	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948730	chr10:55845301-56093271	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv2829924	chr10:55906112-56038831	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv20105	chr10:55939729-56047721	ZNF genes & repeats Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1053832	chr10:56022197-56061600	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv2753511	chr10:56022197-56153636	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv6698	chr10:56030123-56074572	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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