Variant report

Variant	rs12257194
Chromosome Location	chr10:112567096-112567097
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:112564097..112567793-chr10:112569786..112571719,3	MCF-7	breast:
2	chr10:112562682..112564741-chr10:112566724..112568597,2	K562	blood:
3	chr10:112566725..112569473-chr10:112626744..112628877,2	MCF-7	breast:
4	chr10:112563350..112568484-chr10:112581268..112585698,6	MCF-7	breast:
5	chr10:112566469..112571087-chr10:112574225..112578785,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000203867	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10159788	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045608	chr10:112524813-112677557	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1041758	chr10:112552897-112677557	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv24150	chr10:112563598-112568976	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112558000-112570200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr10:112558000-112578400	Weak transcription	Aorta	Aorta
3	chr10:112559400-112567200	Weak transcription	Right Ventricle	heart
4	chr10:112562800-112576800	Weak transcription	Psoas Muscle	Psoas
5	chr10:112563000-112572800	Enhancers	Fetal Heart	heart
6	chr10:112564000-112581600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:112564200-112567800	Weak transcription	Gastric	stomach
8	chr10:112564200-112567800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr10:112564200-112567800	Weak transcription	Spleen	Spleen
10	chr10:112564200-112568600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr10:112564200-112570400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr10:112564200-112572000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:112564200-112572200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr10:112564200-112572400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr10:112564200-112572600	Weak transcription	K562	blood
16	chr10:112564200-112575000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr10:112564200-112579200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:112564400-112567800	Weak transcription	Fetal Intestine Small	intestine
19	chr10:112564400-112571600	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr10:112564800-112567800	Weak transcription	Fetal Intestine Large	intestine
21	chr10:112564800-112570200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr10:112565000-112567800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr10:112565400-112576000	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr10:112565600-112567200	Weak transcription	Pancreas	Pancrea
25	chr10:112565600-112567400	Weak transcription	Stomach Mucosa	stomach
26	chr10:112565600-112567600	Weak transcription	Colonic Mucosa	Colon
27	chr10:112565600-112567800	Weak transcription	Duodenum Mucosa	Duodenum
28	chr10:112565600-112567800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr10:112565600-112568600	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr10:112565600-112569400	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr10:112565600-112574800	Weak transcription	Colon Smooth Muscle	Colon
32	chr10:112566200-112567400	Strong transcription	HSMMtube	muscle
33	chr10:112566400-112567200	Weak transcription	Esophagus	oesophagus
34	chr10:112566400-112567600	Weak transcription	Primary T cells from cord blood	blood
35	chr10:112566400-112567600	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr10:112566800-112567800	Strong transcription	Skeletal Muscle Male	skeletal muscle
37	chr10:112566800-112568000	Genic enhancers	Left Ventricle	heart
38	chr10:112567000-112567400	Weak transcription	Right Atrium	heart

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