Variant report

Variant	rs12260147
Chromosome Location	chr10:27081563-27081564
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11015219	1.00[AMR][1000 genomes]
rs11015248	1.00[AMR][1000 genomes]
rs11015252	1.00[AMR][1000 genomes]
rs11015317	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12240788	1.00[AMR][1000 genomes]
rs12241021	1.00[AMR][1000 genomes]
rs12242741	1.00[AMR][1000 genomes]
rs12242781	1.00[AMR][1000 genomes]
rs12246527	1.00[AMR][1000 genomes]
rs12246860	1.00[AMR][1000 genomes]
rs12248463	1.00[AMR][1000 genomes]
rs12249971	1.00[AMR][1000 genomes]
rs12252829	1.00[AMR][1000 genomes]
rs12253149	1.00[AMR][1000 genomes]
rs12257262	1.00[AMR][1000 genomes]
rs12261754	1.00[AMR][1000 genomes]
rs12262215	1.00[AMR][1000 genomes]
rs12266735	1.00[AMR][1000 genomes]
rs12269061	1.00[AMR][1000 genomes]
rs56769298	1.00[AMR][1000 genomes]
rs58176653	1.00[AMR][1000 genomes]
rs58432580	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv933544	chr10:27005220-27111998	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv971858	chr10:27066006-27157708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27044800-27082000	Weak transcription	Fetal Lung	lung
2	chr10:27051400-27082000	Weak transcription	Fetal Stomach	stomach
3	chr10:27069800-27084600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:27070600-27082800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:27070800-27091800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr10:27071000-27082000	Weak transcription	Fetal Brain Male	brain
7	chr10:27071000-27083800	Weak transcription	Fetal Intestine Small	intestine
8	chr10:27071000-27084600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr10:27071200-27082000	Weak transcription	A549	lung
10	chr10:27071200-27089000	Weak transcription	Lung	lung
11	chr10:27071200-27089600	Weak transcription	Spleen	Spleen
12	chr10:27071400-27088600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr10:27072000-27081800	Weak transcription	NH-A	brain
14	chr10:27073000-27087000	Weak transcription	Thymus	Thymus
15	chr10:27073000-27088200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr10:27074000-27081800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr10:27074000-27081800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:27074200-27082200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr10:27074600-27081800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr10:27074800-27081600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr10:27074800-27083200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:27074800-27091600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr10:27074800-27091800	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr10:27075000-27087000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr10:27075000-27087000	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr10:27075000-27089400	Weak transcription	Left Ventricle	heart
27	chr10:27075000-27091600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr10:27075000-27104600	Weak transcription	Esophagus	oesophagus
29	chr10:27075200-27088400	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr10:27075400-27081800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr10:27078800-27082800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr10:27079000-27082200	Weak transcription	Primary B cells from cord blood	blood
33	chr10:27079800-27081600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr10:27079800-27081800	Weak transcription	Primary B cells from peripheral blood	blood
35	chr10:27079800-27082200	Weak transcription	Right Ventricle	heart
36	chr10:27079800-27085000	Weak transcription	Primary hematopoietic stem cells	blood
37	chr10:27079800-27091800	Weak transcription	Fetal Heart	heart
38	chr10:27079800-27092200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr10:27080000-27082800	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr10:27080200-27082200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr10:27080400-27081600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr10:27080400-27082600	Enhancers	Brain Substantia Nigra	brain
43	chr10:27080400-27082800	Enhancers	Primary T helper cells PMA-I stimulated	--
44	chr10:27080400-27083000	Enhancers	Brain Anterior Caudate	brain
45	chr10:27080600-27081800	Weak transcription	NHDF-Ad	bronchial
46	chr10:27080600-27082600	Enhancers	Brain Hippocampus Middle	brain
47	chr10:27080600-27082800	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr10:27080600-27083200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr10:27080800-27081800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr10:27080800-27081800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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