The 2.0 version of rSNPBase
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Variant report
Variant
rs12261689
Chromosome Location
chr10:23312885-23312886
allele
A/G
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:3)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:3 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr10:23310332..23312898-chr10:23317711..23319929,2
MCF-7
breast:
2
chr10:23304838..23306425-chr10:23312487..23315247,2
K562
blood:
3
chr10:23311558..23313154-chr10:23341132..23342839,2
K562
blood:
No data
No data
No data
Variant related genes
Relation type
ENSG00000165309
Chromatin interaction
Extended variants information (count: 10 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:10)
rs_ID
r
2
[population]
rs11013266
1.00[AMR][1000 genomes]
rs12240971
1.00[AMR][1000 genomes]
rs12243018
1.00[AMR][1000 genomes]
rs12249351
1.00[AMR][1000 genomes]
rs12251949
1.00[AMR][1000 genomes]
rs12260464
1.00[AMR][1000 genomes]
rs12262236
0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs7072923
1.00[AMR][1000 genomes]
rs7097832
1.00[AMR][1000 genomes]
rs9971201
1.00[AMR][1000 genomes]
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links