Variant report

Variant	rs12262619
Chromosome Location	chr10:91808708-91808709
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10159550	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10159552	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10160039	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10160099	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10160110	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10509588	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10509589	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10881733	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10881734	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10881735	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10881736	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11185975	0.93[ASN][1000 genomes]
rs11185977	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11185979	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11185981	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11498643	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11812174	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11815456	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11819381	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11819450	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12241158	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12246993	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12252894	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12254739	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12255265	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12262039	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12262731	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12573189	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12769174	0.96[ASN][1000 genomes]
rs12776208	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12781056	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1325732	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1325733	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1575792	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1575793	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1575794	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1590529	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1590530	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17130083	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1853843	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1853844	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1891809	0.81[AMR][1000 genomes]
rs1952103	0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2182238	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2419348	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2419350	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2419352	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2419353	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28421499	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28706694	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34769691	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4256895	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4933527	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4933528	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933529	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4933530	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4933531	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5012487	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6583672	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6583674	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583675	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6583676	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6583677	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6583678	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7068327	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7069664	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7069670	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7075687	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7078287	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7078536	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7079287	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7081936	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7082356	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7082739	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7087045	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7087883	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7100106	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7100933	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs71479034	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7894263	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7898630	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7913413	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7919147	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs927775	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs927776	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043571	chr10:91568555-92036154	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv551874	chr10:91570211-92036154	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv949678	chr10:91589048-92016474	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv895883	chr10:91610601-92195828	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1039731	chr10:91645718-92198264	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv540743	chr10:91645718-92198264	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv467430	chr10:91681344-92297943	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv551875	chr10:91681344-92297943	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	esv1839881	chr10:91762226-91861413	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv519094	chr10:91769945-91927196	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91770800-91810400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:91807400-91810400	Weak transcription	HMEC	breast
3	chr10:91807800-91811400	ZNF genes & repeats	GM12878-XiMat	blood
4	chr10:91808600-91809000	Weak transcription	Primary B cells from cord blood	blood

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