Variant report

Variant	rs12262692
Chromosome Location	chr10:90645243-90645244
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11202882	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11202884	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12240659	1.00[AMR][1000 genomes]
rs12245057	1.00[AMR][1000 genomes]
rs12245122	1.00[AMR][1000 genomes]
rs12258025	1.00[AMR][1000 genomes]
rs12260182	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12266049	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12266993	1.00[AMR][1000 genomes]
rs58014217	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7070713	1.00[AMR][1000 genomes]
rs9804254	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv831942	chr10:90564697-90730352	Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90641000-90645400	Enhancers	Small Intestine	intestine
2	chr10:90641000-90646400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:90641000-90647200	Weak transcription	Spleen	Spleen
4	chr10:90641000-90653600	Weak transcription	Gastric	stomach
5	chr10:90641400-90646400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr10:90641400-90658600	Weak transcription	Brain Angular Gyrus	brain
7	chr10:90641600-90645800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr10:90641600-90646600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:90641600-90653200	Weak transcription	Colonic Mucosa	Colon
10	chr10:90641800-90646400	Weak transcription	Colon Smooth Muscle	Colon
11	chr10:90641800-90647400	Weak transcription	Ovary	ovary
12	chr10:90641800-90653800	Weak transcription	Stomach Mucosa	stomach
13	chr10:90641800-90656400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:90641800-90661800	Weak transcription	Thymus	Thymus
15	chr10:90642000-90646600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr10:90642000-90648800	Enhancers	Primary B cells from peripheral blood	blood
17	chr10:90642000-90650400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr10:90642000-90651000	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr10:90642000-90684800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr10:90642000-90686400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr10:90642200-90648000	Weak transcription	Fetal Muscle Leg	muscle
22	chr10:90642200-90648400	Enhancers	Primary T cells from cord blood	blood
23	chr10:90642200-90648800	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr10:90642200-90649800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr10:90642200-90656600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr10:90642400-90646400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr10:90642400-90647400	Weak transcription	Fetal Thymus	thymus
28	chr10:90642400-90648200	Weak transcription	Adipose Nuclei	Adipose
29	chr10:90642400-90651200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr10:90642400-90652000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr10:90642600-90646200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr10:90642600-90646400	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr10:90642600-90648000	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr10:90642600-90649200	Weak transcription	Primary B cells from cord blood	blood
35	chr10:90642600-90653800	Weak transcription	Primary hematopoietic stem cells	blood
36	chr10:90642800-90656400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr10:90643000-90645400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr10:90643200-90645600	Flanking Active TSS	GM12878-XiMat	blood
39	chr10:90643200-90651800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr10:90643400-90645600	Enhancers	Primary T killer memory cells from peripheral blood	blood
41	chr10:90643400-90646000	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr10:90643400-90647000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr10:90643400-90647600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr10:90643400-90650400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr10:90643400-90651800	Weak transcription	NH-A	brain
46	chr10:90643600-90646400	Weak transcription	HSMMtube	muscle
47	chr10:90643600-90648000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr10:90643600-90648400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr10:90643600-90650800	Enhancers	Primary T helper cells PMA-I stimulated	--
50	chr10:90643800-90647800	Weak transcription	Osteobl	bone

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