Variant report

Variant	rs12263021
Chromosome Location	chr10:99038498-99038499
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:99030229..99033115-chr10:99036634..99039427,3	K562	blood:
2	chr10:99036931..99039171-chr10:99085750..99087329,2	K562	blood:
3	chr10:99031855..99035094-chr10:99036519..99039061,3	K562	blood:
4	chr10:99029216..99031729-chr10:99037036..99038703,2	K562	blood:
5	chr10:99037958..99038944-chr10:99092338..99093941,8	MCF-7	breast:
6	chr10:99036915..99039794-chr10:99077195..99080138,2	MCF-7	breast:
7	chr10:99037600..99039792-chr10:99078754..99080411,2	K562	blood:
8	chr10:99037940..99038860-chr10:99115149..99115993,4	MCF-7	breast:
9	chr10:99038038..99038854-chr10:99093284..99094248,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000213390	Chromatin interaction
ENSG00000231398	Chromatin interaction
ENSG00000165879	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10466168	1.00[AMR][1000 genomes]
rs11189088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11189101	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11189105	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11189108	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12247452	0.90[AFR][1000 genomes]
rs12249697	1.00[AMR][1000 genomes]
rs12254370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12259961	0.91[AFR][1000 genomes]
rs12261079	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1041614	chr10:98928281-99083056	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv1045553	chr10:98944397-99122203	Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv540750	chr10:98944397-99122203	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	esv1797410	chr10:98983785-99041740	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1040903	chr10:98986382-99047475	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv831952	chr10:98998344-99145924	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
8	nsv895914	chr10:99006083-99131676	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
9	nsv7507	chr10:99031233-99070690	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98978600-99051800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:98987200-99051200	Weak transcription	Pancreas	Pancrea
3	chr10:98994600-99039000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:99005200-99046800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr10:99016000-99038600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:99016800-99038600	Weak transcription	HUVEC	blood vessel
7	chr10:99019400-99050000	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr10:99019400-99051600	Weak transcription	Ovary	ovary
9	chr10:99021400-99051000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr10:99023600-99051200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr10:99024000-99046800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr10:99024000-99050800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:99024400-99050000	Weak transcription	Spleen	Spleen
14	chr10:99024800-99051200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr10:99025800-99039200	Weak transcription	Fetal Muscle Trunk	muscle
16	chr10:99025800-99039200	Weak transcription	Fetal Muscle Leg	muscle
17	chr10:99025800-99050800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr10:99026000-99038600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr10:99026000-99051200	Weak transcription	Primary T cells from cord blood	blood
20	chr10:99027600-99046200	Weak transcription	Thymus	Thymus
21	chr10:99027800-99045600	Weak transcription	Fetal Thymus	thymus
22	chr10:99028600-99051200	Weak transcription	Small Intestine	intestine
23	chr10:99028800-99046800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr10:99031400-99050400	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr10:99034800-99039200	Weak transcription	Psoas Muscle	Psoas
26	chr10:99034800-99046600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr10:99037200-99039600	Enhancers	Primary hematopoietic stem cells	blood
28	chr10:99037200-99040000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr10:99037400-99038600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:99037400-99038600	Enhancers	Primary B cells from peripheral blood	blood
31	chr10:99037400-99038800	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr10:99037400-99039000	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr10:99037400-99039000	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr10:99037400-99039000	Enhancers	Colon Smooth Muscle	Colon
35	chr10:99037400-99039200	Enhancers	Hela-S3	cervix
36	chr10:99037400-99039400	Enhancers	Liver	Liver
37	chr10:99037400-99039400	Enhancers	Fetal Heart	heart
38	chr10:99037400-99039400	Enhancers	HSMM	muscle
39	chr10:99037400-99039400	Enhancers	HSMMtube	muscle
40	chr10:99037400-99039600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr10:99037400-99039600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr10:99037400-99039600	Enhancers	Dnd41	blood
43	chr10:99037400-99039800	Enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr10:99037400-99039800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr10:99037400-99039800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr10:99037400-99039800	Enhancers	NHDF-Ad	bronchial
47	chr10:99037400-99039800	Enhancers	Osteobl	bone
48	chr10:99037400-99040000	Enhancers	Primary monocytes fromperipheralblood	blood
49	chr10:99037400-99040000	Enhancers	Primary neutrophils fromperipheralblood	blood
50	chr10:99037600-99039000	Enhancers	Skeletal Muscle Male	skeletal muscle

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