Variant report

Variant	rs12264320
Chromosome Location	chr10:4983773-4983774
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10159511	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11252833	0.84[EUR][1000 genomes]
rs11252839	0.90[EUR][1000 genomes]
rs12245048	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12255269	0.89[ASN][1000 genomes]
rs12258506	0.89[ASN][1000 genomes]
rs12258513	0.89[ASN][1000 genomes]
rs12261928	0.89[ASN][1000 genomes]
rs12569724	0.80[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4277002	0.87[ASN][1000 genomes]
rs4448588	0.91[ASN][1000 genomes]
rs4451618	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7068494	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7081411	0.89[ASN][1000 genomes]
rs7089950	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7098390	0.89[ASN][1000 genomes]
rs72769959	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72769961	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7896709	0.85[ASN][1000 genomes]
rs7920935	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv948794	chr10:4863093-5227382	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1045155	chr10:4872239-5211318	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1040343	chr10:4872814-5196815	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv540462	chr10:4872814-5196815	Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv869470	chr10:4878904-5203685	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv466713	chr10:4901798-5319679	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv549881	chr10:4901798-5319679	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
9	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
10	nsv1050246	chr10:4927428-5211318	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
11	nsv894793	chr10:4935482-4988818	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv549882	chr10:4943518-5203864	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
13	esv2763913	chr10:4961021-5321407	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
14	nsv894794	chr10:4972761-5121745	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4967800-4983800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr10:4968600-4990800	Weak transcription	Primary T cells from cord blood	blood
3	chr10:4973000-4984800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:4973000-5005600	Weak transcription	Left Ventricle	heart
5	chr10:4973200-4983800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:4973200-4994800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr10:4974000-4990600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:4974200-4986200	Weak transcription	Psoas Muscle	Psoas
9	chr10:4974200-4990600	Weak transcription	Esophagus	oesophagus
10	chr10:4974600-4985400	Weak transcription	Fetal Stomach	stomach
11	chr10:4977800-4988200	Weak transcription	Pancreas	Pancrea
12	chr10:4980600-4984200	Enhancers	Fetal Intestine Small	intestine
13	chr10:4980800-4984200	Enhancers	Fetal Intestine Large	intestine
14	chr10:4981000-4984200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr10:4981000-4986000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:4981200-4984000	Enhancers	K562	blood
17	chr10:4981200-4984600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:4981400-4985600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:4981400-4985600	Enhancers	HMEC	breast
20	chr10:4981400-4987600	Enhancers	Hela-S3	cervix
21	chr10:4981600-4985400	Weak transcription	Ovary	ovary
22	chr10:4982000-4989600	Enhancers	HepG2	liver
23	chr10:4982200-4987400	Weak transcription	Duodenum Mucosa	Duodenum
24	chr10:4982400-4984000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr10:4982400-4984000	Enhancers	A549	lung
26	chr10:4982400-4984000	Weak transcription	NHDF-Ad	bronchial
27	chr10:4982600-4983800	Weak transcription	Liver	Liver
28	chr10:4982600-4984000	Weak transcription	HSMM	muscle
29	chr10:4982600-4985600	Enhancers	NHEK	skin
30	chr10:4983200-4984000	Enhancers	Right Atrium	heart
31	chr10:4983200-4984000	Enhancers	Right Ventricle	heart
32	chr10:4983200-4985000	Enhancers	Aorta	Aorta
33	chr10:4983200-4986400	Enhancers	HSMMtube	muscle
34	chr10:4983200-4987000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr10:4983400-4983800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr10:4983400-4984000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr10:4983400-4985000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr10:4983400-4985600	Enhancers	Stomach Mucosa	stomach
39	chr10:4983400-4987200	Enhancers	Muscle Satellite Cultured Cells	--
40	chr10:4983600-4984000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr10:4983600-4984600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:4983600-4985600	Enhancers	HUVEC	blood vessel
43	chr10:4983600-4987200	Enhancers	Osteobl	bone
44	chr10:4983600-4991600	Enhancers	Adipose Nuclei	Adipose

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