Variant report

Variant	rs12265642
Chromosome Location	chr10:50156562-50156563
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50156228..50157888-chr10:50160384..50163002,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10508909	1.00[YRI][hapmap]
rs11101510	1.00[YRI][hapmap]
rs11101539	1.00[YRI][hapmap]
rs11101546	1.00[YRI][hapmap]
rs12241547	1.00[YRI][hapmap]
rs12242384	1.00[YRI][hapmap]
rs12242587	1.00[YRI][hapmap]
rs12249664	1.00[YRI][hapmap]
rs12255663	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12267445	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50134600-50160400	Weak transcription	Right Atrium	heart
2	chr10:50143600-50164400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:50144600-50196200	Strong transcription	Primary B cells from cord blood	blood
4	chr10:50145000-50193200	Strong transcription	Primary B cells from peripheral blood	blood
5	chr10:50145400-50193200	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr10:50145800-50193400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr10:50148000-50193600	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr10:50149600-50161200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr10:50150400-50159000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr10:50153400-50187800	Strong transcription	GM12878-XiMat	blood
11	chr10:50153600-50193600	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr10:50154400-50159200	Strong transcription	Primary hematopoietic stem cells	blood
13	chr10:50154600-50160400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:50154600-50162000	Weak transcription	Colon Smooth Muscle	Colon
15	chr10:50154800-50165800	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr10:50155000-50160000	Weak transcription	Aorta	Aorta
17	chr10:50155200-50158800	Weak transcription	Spleen	Spleen
18	chr10:50155800-50157000	Enhancers	HUVEC	blood vessel
19	chr10:50155800-50157400	Strong transcription	Primary T cells from cord blood	blood
20	chr10:50155800-50158800	Weak transcription	Lung	lung
21	chr10:50156200-50158800	Weak transcription	Fetal Muscle Trunk	muscle
22	chr10:50156400-50158400	Weak transcription	Fetal Muscle Leg	muscle

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