Variant report

Variant	rs12266931
Chromosome Location	chr10:99177967-99177968
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:99176624..99178423-chr10:99181529..99184157,2	K562	blood:
2	chr10:99158317..99161416-chr10:99176559..99179777,3	K562	blood:
3	chr10:99159177..99160886-chr10:99176559..99179159,2	K562	blood:
4	chr10:99171315..99175453-chr10:99176654..99180468,6	K562	blood:
5	chr10:99176991..99182775-chr10:99183273..99189892,9	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AL355490.1-1	chr10:99176179-99185666	NONHSAT015863

No data

Variant related genes	Relation type
ENSG00000171314	Chromatin interaction
ENSG00000231970	Chromatin interaction
ENSG00000224474	Chromatin interaction
ENSG00000052749	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11189216	0.89[ASN][1000 genomes]
rs11189217	0.89[ASN][1000 genomes]
rs12258736	0.89[ASN][1000 genomes]
rs28616696	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467440	chr10:99134784-99204791	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv552025	chr10:99134784-99204791	Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99161600-99178800	Weak transcription	Fetal Stomach	stomach
2	chr10:99161600-99185200	Weak transcription	Pancreas	Pancrea
3	chr10:99167400-99178000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr10:99167400-99179000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:99167400-99185200	Weak transcription	Fetal Lung	lung
6	chr10:99167400-99185400	Weak transcription	Gastric	stomach
7	chr10:99167600-99178000	Weak transcription	Fetal Muscle Leg	muscle
8	chr10:99167600-99178400	Weak transcription	Right Atrium	heart
9	chr10:99167600-99185200	Weak transcription	Fetal Intestine Small	intestine
10	chr10:99167600-99185200	Weak transcription	Left Ventricle	heart
11	chr10:99167800-99178000	Weak transcription	A549	lung
12	chr10:99168800-99178000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr10:99171400-99179400	Weak transcription	Spleen	Spleen
14	chr10:99171400-99185200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:99171600-99178000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:99172800-99178200	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr10:99173200-99182800	Weak transcription	HUVEC	blood vessel
18	chr10:99173600-99178000	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr10:99173800-99178000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:99173800-99178200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr10:99173800-99182400	Weak transcription	Esophagus	oesophagus
22	chr10:99174000-99178000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr10:99174000-99178200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr10:99174000-99178200	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr10:99174000-99185000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:99174200-99178000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr10:99174200-99178000	Weak transcription	GM12878-XiMat	blood
28	chr10:99174200-99178200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr10:99174200-99179000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr10:99174200-99183000	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr10:99174200-99184800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr10:99174200-99185000	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr10:99174400-99178000	Weak transcription	Stomach Mucosa	stomach
34	chr10:99175000-99178000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr10:99175000-99182800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr10:99175200-99178000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr10:99175200-99178000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr10:99175200-99178000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr10:99175200-99178000	Weak transcription	HMEC	breast
40	chr10:99175200-99178000	Weak transcription	NHDF-Ad	bronchial
41	chr10:99175200-99178000	Weak transcription	NHEK	skin
42	chr10:99175200-99178400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr10:99175200-99178800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr10:99175200-99179000	Weak transcription	HSMMtube	muscle
45	chr10:99175200-99182200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr10:99175200-99182800	Weak transcription	NH-A	brain
47	chr10:99175200-99182800	Weak transcription	Osteobl	bone
48	chr10:99175400-99185000	Weak transcription	Brain Germinal Matrix	brain
49	chr10:99176200-99178200	Enhancers	Primary neutrophils fromperipheralblood	blood
50	chr10:99176400-99178000	Weak transcription	Small Intestine	intestine

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