Variant report

Variant	rs1226911
Chromosome Location	chr1:45634173-45634174
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:45480011..45482836-chr1:45633492..45635826,3	K562	blood:

Variant related genes	Relation type
ENSG00000126088	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11211075	0.85[AMR][1000 genomes]
rs11211077	0.85[AMR][1000 genomes]
rs1143726	0.85[AMR][1000 genomes]
rs1143727	0.88[AMR][1000 genomes]
rs1144866	0.85[AMR][1000 genomes]
rs1144867	0.88[AMR][1000 genomes]
rs1144870	0.88[AMR][1000 genomes]
rs1144871	0.88[AMR][1000 genomes]
rs1152017	0.85[AMR][1000 genomes]
rs1152018	0.85[AMR][1000 genomes]
rs1152020	0.88[AMR][1000 genomes]
rs1226722	0.85[AMR][1000 genomes]
rs1226723	0.81[AMR][1000 genomes]
rs1226727	0.85[AMR][1000 genomes]
rs1226728	0.85[AMR][1000 genomes]
rs1226736	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1226740	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1226749	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1226912	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16832411	0.81[AMR][1000 genomes]
rs1698295	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1938302	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1938406	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2211644	0.88[AMR][1000 genomes]
rs2356304	0.88[AMR][1000 genomes]
rs2883902	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2997400	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2997462	0.88[AMR][1000 genomes]
rs3009973	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3009976	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3009978	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3121731	0.88[AMR][1000 genomes]
rs3121770	0.88[AMR][1000 genomes]
rs3128437	0.88[AMR][1000 genomes]
rs3128443	0.88[AMR][1000 genomes]
rs6429558	0.85[AMR][1000 genomes]
rs6702389	0.85[AMR][1000 genomes]
rs7517524	0.81[AMR][1000 genomes]
rs7548075	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529677	chr1:45179509-45748571	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	424 gene(s)	inside rSNPs	diseases
2	nsv1002026	chr1:45187594-45758048	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	386 gene(s)	inside rSNPs	diseases
3	nsv915644	chr1:45282802-45696079	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
4	nsv498036	chr1:45428030-46050934	Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
5	nsv947110	chr1:45627447-45642615	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:45628400-45634800	Weak transcription	Hela-S3	cervix

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