The 2.0 version of rSNPBase

Variant report

Variant rs1227
Chromosome Location chr4:106967282-106967283
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:106955000-106969600 Weak transcription NHLF lung
2 chr4:106956000-106969800 Weak transcription Muscle Satellite Cultured Cells --
3 chr4:106956200-106967400 Weak transcription Primary hematopoietic stem cells short term culture blood
4 chr4:106956200-106968200 Weak transcription Fetal Stomach stomach
5 chr4:106956200-106969600 Weak transcription HUES6 Cell Line embryonic stem cell
6 chr4:106956200-106970000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
7 chr4:106956600-106969200 Weak transcription Fetal Muscle Leg muscle
8 chr4:106956800-106970800 Weak transcription HSMMtube muscle
9 chr4:106958400-106969200 Weak transcription Fetal Adrenal Gland Adrenal Gland
10 chr4:106958400-106969400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr4:106959200-106969000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
12 chr4:106959200-106969800 Weak transcription HUES64 Cell Line embryonic stem cell
13 chr4:106959600-106969200 Weak transcription Pancreas Pancrea
14 chr4:106959600-106969600 Weak transcription Fetal Kidney kidney
15 chr4:106959600-106983400 Weak transcription HepG2 liver
16 chr4:106960600-106969400 Weak transcription Fetal Muscle Trunk muscle
17 chr4:106961600-106969600 Weak transcription Ovary ovary
18 chr4:106962400-106969400 Weak transcription NHDF-Ad bronchial
19 chr4:106962600-106970400 Weak transcription Small Intestine intestine
20 chr4:106962800-106969400 Weak transcription Duodenum Smooth Muscle Duodenum
21 chr4:106964200-106972000 Weak transcription Aorta Aorta
22 chr4:106965000-106969600 Weak transcription Brain Hippocampus Middle brain
23 chr4:106965000-106969600 Weak transcription Fetal Heart heart
24 chr4:106965200-106969400 Weak transcription Fetal Brain Female brain
25 chr4:106965400-106969600 Weak transcription Brain Substantia Nigra brain
26 chr4:106965800-106968200 Weak transcription Brain Anterior Caudate brain
27 chr4:106965800-106977600 Weak transcription Primary T helper naive cells fromperipheralblood blood
28 chr4:106966000-106967800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
29 chr4:106966000-106968400 Weak transcription Primary B cells from peripheral blood blood
30 chr4:106966200-106968600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
31 chr4:106966200-106968800 Weak transcription Primary T cells fromperipheralblood blood
32 chr4:106966200-106970000 Weak transcription Brain Cingulate Gyrus brain
33 chr4:106966400-106968800 Weak transcription Rectal Mucosa Donor 31 rectum
34 chr4:106966600-106967400 Strong transcription Duodenum Mucosa Duodenum
35 chr4:106966600-106967600 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr4:106966600-106967600 Strong transcription Breast Myoepithelial Primary Cells Breast
37 chr4:106966600-106967800 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
38 chr4:106966600-106967800 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
39 chr4:106966600-106967800 Strong transcription Fetal Lung lung
40 chr4:106966600-106967800 Strong transcription Rectal Mucosa Donor 29 rectum
41 chr4:106966600-106968000 Strong transcription Primary B cells from cord blood blood
42 chr4:106966600-106968000 Strong transcription Primary T cells from cord blood blood
43 chr4:106966600-106968600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
44 chr4:106966600-106969800 Weak transcription Stomach Smooth Muscle stomach
45 chr4:106966800-106967800 Strong transcription Primary hematopoietic stem cells blood
46 chr4:106966800-106967800 Strong transcription Psoas Muscle Psoas
47 chr4:106966800-106968000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr4:106966800-106968400 Strong transcription Adipose Nuclei Adipose
49 chr4:106967000-106967800 Strong transcription Liver Liver
50 chr4:106967000-106969800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain

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Last update: Aug 31, 2015