Variant report

Variant	rs12270547
Chromosome Location	chr11:100935703-100935704
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11224565	1.00[AMR][1000 genomes]
rs11224566	1.00[AMR][1000 genomes]
rs11571230	1.00[AMR][1000 genomes]
rs12273103	1.00[AMR][1000 genomes]
rs12287845	1.00[AMR][1000 genomes]
rs12294179	1.00[AMR][1000 genomes]
rs73571732	1.00[AMR][1000 genomes]
rs73571733	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100905200-100935800	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:100905400-100997600	Weak transcription	Left Ventricle	heart
3	chr11:100931400-100950400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:100932400-100937800	Weak transcription	Right Atrium	heart
5	chr11:100933400-100936800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:100934600-100937400	Weak transcription	Right Ventricle	heart
7	chr11:100935200-100936000	Genic enhancers	Ovary	ovary
8	chr11:100935600-100935800	Enhancers	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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