Variant report

Variant	rs12271176
Chromosome Location	chr11:9227199-9227200
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11042204	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1040049	chr11:9152536-9363488	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
5	nsv1053045	chr11:9208881-9363488	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	nsv540947	chr11:9208881-9363488	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9162000-9230600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:9169600-9238000	Weak transcription	Esophagus	oesophagus
3	chr11:9171800-9230200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr11:9172000-9230400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr11:9182400-9231800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:9199800-9230400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr11:9200600-9229000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:9200600-9230400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr11:9201000-9230800	Weak transcription	HMEC	breast
10	chr11:9202600-9251200	Weak transcription	Small Intestine	intestine
11	chr11:9203200-9227200	Weak transcription	Right Atrium	heart
12	chr11:9214000-9227600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:9215400-9228400	Weak transcription	A549	lung
14	chr11:9215600-9228600	Weak transcription	Fetal Kidney	kidney
15	chr11:9219400-9228400	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr11:9221000-9227200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:9221200-9228400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:9221600-9227800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:9221600-9229200	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr11:9222000-9227800	Strong transcription	HSMM	muscle
21	chr11:9222000-9228200	Weak transcription	Colon Smooth Muscle	Colon
22	chr11:9222000-9228400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:9222200-9228400	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr11:9222400-9228400	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr11:9222600-9227200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr11:9222800-9227600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr11:9222800-9228400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr11:9223000-9227600	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr11:9223000-9227600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr11:9223000-9228400	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr11:9223200-9227200	Strong transcription	Osteobl	bone
32	chr11:9223400-9228600	Strong transcription	HepG2	liver
33	chr11:9223600-9230800	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr11:9223800-9227800	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr11:9223800-9227800	Strong transcription	Placenta	Placenta
36	chr11:9224000-9232600	Weak transcription	Colonic Mucosa	Colon
37	chr11:9224200-9227600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr11:9224200-9227600	Strong transcription	Fetal Muscle Leg	muscle
39	chr11:9224200-9227600	Strong transcription	Pancreas	Pancrea
40	chr11:9224400-9227800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr11:9224400-9228400	Enhancers	Fetal Heart	heart
42	chr11:9224800-9227200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr11:9224800-9227400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr11:9224800-9227400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr11:9224800-9227600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr11:9225000-9227400	Strong transcription	Fetal Stomach	stomach
47	chr11:9225400-9236800	Weak transcription	Primary B cells from cord blood	blood
48	chr11:9225600-9229000	Weak transcription	Fetal Intestine Large	intestine
49	chr11:9225600-9229800	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr11:9225600-9230800	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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