Variant report

Variant	rs12271265
Chromosome Location	chr11:108573156-108573157
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:108572816..108575697-chr11:108577142..108578962,2	K562	blood:
2	chr11:108463226..108465641-chr11:108571904..108576171,3	K562	blood:
3	chr11:108571836..108575697-chr11:108576409..108578962,3	K562	blood:

Variant related genes	Relation type
ENSG00000110723	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11212761	1.00[AFR][1000 genomes]
rs12279805	1.00[AMR][1000 genomes]
rs12796331	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv832264	chr11:108449613-108623720	ZNF genes & repeats Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108536600-108578400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:108538200-108574800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:108541400-108578200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:108543600-108575200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:108548200-108577600	Weak transcription	Colonic Mucosa	Colon
6	chr11:108548400-108577200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr11:108548600-108577400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:108548800-108577400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr11:108549200-108577400	Weak transcription	Right Ventricle	heart
10	chr11:108554400-108577800	Weak transcription	Psoas Muscle	Psoas
11	chr11:108558000-108578600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr11:108560600-108574600	Weak transcription	Fetal Brain Female	brain
13	chr11:108560600-108577800	Weak transcription	Colon Smooth Muscle	Colon
14	chr11:108561600-108575200	Weak transcription	Brain Hippocampus Middle	brain
15	chr11:108561600-108577400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr11:108561600-108578400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:108561800-108577600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:108561800-108577600	Weak transcription	Brain Angular Gyrus	brain
19	chr11:108561800-108577800	Weak transcription	Brain Substantia Nigra	brain
20	chr11:108561800-108577800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr11:108561800-108579200	Weak transcription	Fetal Intestine Small	intestine
22	chr11:108561800-108579200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr11:108561800-108581400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:108561800-108581400	Weak transcription	Gastric	stomach
25	chr11:108561800-108581400	Weak transcription	Thymus	Thymus
26	chr11:108561800-108581600	Weak transcription	Spleen	Spleen
27	chr11:108562000-108577400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr11:108563000-108581400	Weak transcription	Pancreas	Pancrea
29	chr11:108563600-108577600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr11:108564400-108577400	Weak transcription	Small Intestine	intestine
31	chr11:108564800-108574600	Weak transcription	Fetal Lung	lung
32	chr11:108564800-108575000	Weak transcription	Aorta	Aorta
33	chr11:108564800-108575000	Weak transcription	Brain Anterior Caudate	brain
34	chr11:108564800-108576000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr11:108564800-108577200	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr11:108564800-108577600	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr11:108564800-108577600	Weak transcription	Placenta	Placenta
38	chr11:108564800-108577600	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr11:108564800-108581400	Weak transcription	Fetal Brain Male	brain
40	chr11:108564800-108595400	Weak transcription	Hela-S3	cervix
41	chr11:108565200-108576600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr11:108565200-108577400	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr11:108565200-108577600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr11:108565200-108577600	Weak transcription	HSMMtube	muscle
45	chr11:108565200-108577800	Weak transcription	NHLF	lung
46	chr11:108565400-108576000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr11:108565600-108579200	Weak transcription	Lung	lung
48	chr11:108565800-108577800	Weak transcription	Stomach Smooth Muscle	stomach
49	chr11:108566000-108577400	Weak transcription	HepG2	liver
50	chr11:108566000-108577600	Weak transcription	Brain Germinal Matrix	brain

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