Variant report

Variant	rs12271560
Chromosome Location	chr11:45415146-45415147
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10838464	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10838465	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10838467	0.89[EUR][1000 genomes]
rs11038428	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12224037	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12275086	0.91[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1873056	0.88[EUR][1000 genomes]
rs2046733	0.89[EUR][1000 genomes]
rs34042421	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35072015	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59678781	0.89[EUR][1000 genomes]
rs7928480	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7943688	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv306	chr11:45414044-45444431	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45405400-45434800	Weak transcription	Right Atrium	heart
2	chr11:45407000-45421000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:45411200-45417000	Enhancers	Liver	Liver
4	chr11:45412200-45415400	Bivalent Enhancer	Fetal Stomach	stomach
5	chr11:45412200-45417600	Weak transcription	Fetal Brain Female	brain
6	chr11:45412600-45415200	Enhancers	Fetal Lung	lung
7	chr11:45412600-45420400	Weak transcription	Gastric	stomach
8	chr11:45413600-45420200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:45413800-45415200	Enhancers	HepG2	liver
10	chr11:45413800-45415400	Weak transcription	Lung	lung
11	chr11:45413800-45417000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:45414000-45415200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:45414400-45415600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:45414600-45417000	Weak transcription	Fetal Brain Male	brain
15	chr11:45414800-45415400	Enhancers	Brain Germinal Matrix	brain
16	chr11:45414800-45418000	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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