Variant report

Variant	rs12271966
Chromosome Location	chr11:121406149-121406150
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:121405326..121406874-chr11:121420837..121422474,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11218348	1.00[MEX][hapmap]
rs12278993	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs597227	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898427	chr11:121299288-121411041	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv522474	chr11:121356968-121436270	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121385600-121418200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr11:121391400-121437200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:121392400-121414800	Weak transcription	Stomach Mucosa	stomach
4	chr11:121393400-121414200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:121393600-121415400	Weak transcription	Colonic Mucosa	Colon
6	chr11:121395200-121414000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr11:121395200-121414400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr11:121395200-121434800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:121395400-121424600	Weak transcription	Gastric	stomach
10	chr11:121396400-121414200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr11:121396400-121445000	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr11:121396600-121414200	Weak transcription	Pancreas	Pancrea
13	chr11:121396600-121437600	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr11:121396800-121414000	Weak transcription	Esophagus	oesophagus
15	chr11:121396800-121414200	Weak transcription	Spleen	Spleen
16	chr11:121396800-121414400	Weak transcription	Fetal Lung	lung
17	chr11:121396800-121415400	Weak transcription	Fetal Stomach	stomach
18	chr11:121396800-121417400	Weak transcription	Aorta	Aorta
19	chr11:121396800-121425400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr11:121397000-121434800	Weak transcription	Fetal Kidney	kidney
21	chr11:121399000-121443200	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr11:121399200-121408400	Strong transcription	HepG2	liver
23	chr11:121399600-121407800	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr11:121399600-121408000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr11:121400800-121408600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr11:121401400-121407800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr11:121401400-121409000	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr11:121401800-121414400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr11:121402000-121408200	Strong transcription	Primary B cells from cord blood	blood
30	chr11:121402000-121408200	Strong transcription	Liver	Liver
31	chr11:121402200-121408800	Strong transcription	Duodenum Mucosa	Duodenum
32	chr11:121402400-121406800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
33	chr11:121402400-121407600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr11:121402400-121407800	Enhancers	Fetal Brain Male	brain
35	chr11:121403000-121406800	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr11:121403000-121407800	Genic enhancers	GM12878-XiMat	blood
37	chr11:121403000-121408400	Strong transcription	Sigmoid Colon	Sigmoid Colon
38	chr11:121403200-121414000	Weak transcription	Fetal Intestine Large	intestine
39	chr11:121403200-121414200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr11:121403800-121408600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr11:121404000-121406200	Enhancers	Brain Angular Gyrus	brain
42	chr11:121404000-121406400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr11:121404000-121406800	Enhancers	Brain Cingulate Gyrus	brain
44	chr11:121404000-121406800	Enhancers	Brain Inferior Temporal Lobe	brain
45	chr11:121404000-121409200	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr11:121404200-121406200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr11:121404200-121406400	Enhancers	Brain Substantia Nigra	brain
48	chr11:121404400-121407000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
49	chr11:121404600-121406200	Strong transcription	H9 Cell Line	embryonic stem cell
50	chr11:121404600-121407600	Strong transcription	Primary T helper cells PMA-I stimulated	--

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