Variant report

Variant	rs12274006
Chromosome Location	chr11:108667507-108667508
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12277508	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283118	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285879	0.84[ASW][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12294159	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34043774	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108644400-108675400	Weak transcription	Primary T cells from cord blood	blood
2	chr11:108657800-108688200	Weak transcription	NHEK	skin
3	chr11:108659800-108670600	Weak transcription	Pancreas	Pancrea
4	chr11:108659800-108675000	Weak transcription	Psoas Muscle	Psoas
5	chr11:108659800-108676800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:108662200-108674600	Weak transcription	GM12878-XiMat	blood
7	chr11:108662600-108667600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:108664200-108671400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr11:108664200-108674600	Weak transcription	Brain Substantia Nigra	brain
10	chr11:108664200-108691000	Weak transcription	K562	blood
11	chr11:108664400-108667800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr11:108666800-108667800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:108667000-108679800	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr11:108667200-108667600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:108667200-108667800	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr11:108667400-108667800	Enhancers	H1 Cell Line	embryonic stem cell
17	chr11:108667400-108667800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:108667400-108667800	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr11:108667400-108667800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links