Variant report

Variant rs12277125
Chromosome Location chr11:67396091-67396092
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:59 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:67379600-67397000 Weak transcription Aorta Aorta
2 chr11:67382400-67396800 Weak transcription Placenta Amnion Placenta Amnion
3 chr11:67384200-67396200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
4 chr11:67384200-67396400 Weak transcription Spleen Spleen
5 chr11:67385400-67396600 Weak transcription Brain Substantia Nigra brain
6 chr11:67385400-67396800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
7 chr11:67388400-67396200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
8 chr11:67389600-67396600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
9 chr11:67389600-67396800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
10 chr11:67389800-67396400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr11:67390600-67396200 Weak transcription Skeletal Muscle Male skeletal muscle
12 chr11:67390600-67396600 Weak transcription HUES64 Cell Line embryonic stem cell
13 chr11:67390600-67397000 Weak transcription ES-I3 Cell Line embryonic stem cell
14 chr11:67390600-67397000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
15 chr11:67391600-67396400 Weak transcription iPS-15b Cell Line embryonic stem cell
16 chr11:67391600-67396400 Weak transcription iPS-18 Cell Line embryonic stem cell
17 chr11:67391600-67396600 Weak transcription iPS-20b Cell Line embryonic stem cell
18 chr11:67393600-67396200 Weak transcription Sigmoid Colon Sigmoid Colon
19 chr11:67393800-67396400 Weak transcription Breast Myoepithelial Primary Cells Breast
20 chr11:67394200-67396200 Strong transcription Fetal Intestine Small intestine
21 chr11:67394200-67396400 Weak transcription Fetal Muscle Leg muscle
22 chr11:67394600-67396200 Enhancers Esophagus oesophagus
23 chr11:67394600-67396400 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
24 chr11:67394600-67396600 Enhancers HUES6 Cell Line embryonic stem cell
25 chr11:67394800-67396400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
26 chr11:67394800-67396400 Strong transcription Fetal Stomach stomach
27 chr11:67394800-67396800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
28 chr11:67395000-67396200 Genic enhancers iPS DF 19.11 Cell Line embryonic stem cell
29 chr11:67395000-67397000 Enhancers ES-UCSF4 Cell Line embryonic stem cell
30 chr11:67395200-67396200 Weak transcription Colonic Mucosa Colon
31 chr11:67395200-67396600 Weak transcription HUES48 Cell Line embryonic stem cell
32 chr11:67395200-67396600 Transcr. at gene 5' and 3' Dnd41 blood
33 chr11:67395400-67396200 Weak transcription ES-WA7 Cell Line embryonic stem cell
34 chr11:67395400-67396400 Weak transcription Psoas Muscle Psoas
35 chr11:67395400-67396600 Enhancers Left Ventricle heart
36 chr11:67395400-67396800 Enhancers H1 Cell Line embryonic stem cell
37 chr11:67395600-67396400 Enhancers Right Atrium heart
38 chr11:67395600-67396800 Enhancers Gastric stomach
39 chr11:67395600-67397200 Enhancers Fetal Heart heart
40 chr11:67395800-67396400 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
41 chr11:67395800-67396400 Enhancers Duodenum Mucosa Duodenum
42 chr11:67395800-67396400 Enhancers Skeletal Muscle Female skeletal muscle
43 chr11:67395800-67396600 Enhancers Stomach Mucosa stomach
44 chr11:67395800-67396600 Enhancers Stomach Smooth Muscle stomach
45 chr11:67395800-67396800 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
46 chr11:67395800-67396800 Enhancers Liver Liver
47 chr11:67396000-67396200 Transcr. at gene 5' and 3' Primary hematopoietic stem cells short term culture blood
48 chr11:67396000-67396200 Genic enhancers K562 blood
49 chr11:67396000-67396400 Enhancers A549 lung
50 chr11:67396000-67396600 Enhancers Rectal Mucosa Donor 29 rectum

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