Variant report

Variant	rs12277560
Chromosome Location	chr11:86487323-86487324
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:24)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:24 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:86380098..86384314-chr11:86483853..86489131,7	MCF-7	breast:
2	chr11:86210673..86211238-chr11:86487133..86487844,2	MCF-7	breast:
3	chr11:86473380..86474187-chr11:86487013..86487737,2	MCF-7	breast:
4	chr11:86450780..86453510-chr11:86484513..86491302,5	MCF-7	breast:
5	chr11:45826505..45828800-chr11:86487152..86489016,2	MCF-7	breast:
6	chr11:86447300..86456471-chr11:86483287..86490697,27	MCF-7	breast:
7	chr11:86473333..86474209-chr11:86486972..86487899,6	MCF-7	breast:
8	chr11:86417268..86418020-chr11:86486992..86487573,2	MCF-7	breast:
9	chr11:86382488..86383151-chr11:86487094..86487919,2	MCF-7	breast:
10	chr11:86486995..86487830-chr11:86500957..86501593,2	MCF-7	breast:
11	chr11:86485881..86490658-chr11:86500006..86503115,5	MCF-7	breast:
12	chr11:86483713..86491421-chr11:86509174..86514607,12	MCF-7	breast:
13	chr11:86486981..86487603-chr11:86501275..86501978,3	MCF-7	breast:
14	chr11:86416820..86418116-chr11:86487134..86487889,4	MCF-7	breast:
15	chr11:86382135..86383069-chr11:86486892..86488024,4	MCF-7	breast:
16	chr11:86487015..86487869-chr11:86506625..86507541,5	MCF-7	breast:
17	chr11:86415971..86417723-chr11:86486189..86487721,2	MCF-7	breast:
18	chr11:86414473..86417898-chr11:86484349..86489062,8	MCF-7	breast:
19	chr11:86384691..86386910-chr11:86486642..86488921,2	MCF-7	breast:
20	chr11:86463047..86464957-chr11:86484717..86487462,2	K562	blood:
21	chr11:86447026..86447879-chr11:86487000..86487588,3	MCF-7	breast:
22	chr11:86480465..86482047-chr11:86485833..86487935,2	MCF-7	breast:
23	chr11:86416820..86418116-chr11:86487036..86487889,7	MCF-7	breast:
24	chr11:86210575..86211339-chr11:86487321..86487822,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000150687	Chromatin interaction
ENSG00000151376	Chromatin interaction
ENSG00000181830	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11234720	1.00[ASN][1000 genomes]
rs12271882	1.00[AFR][1000 genomes]
rs12294742	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1049157	chr11:86409059-86504155	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv521505	chr11:86438115-86515072	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86486600-86487400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:86486800-86487800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:86487000-86487400	Enhancers	Ovary	ovary
4	chr11:86487000-86487600	Enhancers	Placenta Amnion	Placenta Amnion
5	chr11:86487000-86487800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:86487000-86488400	Flanking Active TSS	Hela-S3	cervix
7	chr11:86487200-86487400	Enhancers	Sigmoid Colon	Sigmoid Colon

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