Variant report

Variant	rs12278487
Chromosome Location	chr11:121104335-121104336
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs575030	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042295	chr11:121072853-121177079	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121100600-121107600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:121101200-121104400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:121101200-121104600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:121102000-121107000	Weak transcription	Fetal Intestine Small	intestine
5	chr11:121102600-121104400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr11:121102600-121104800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr11:121102600-121105800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:121102800-121107400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:121102800-121107400	Weak transcription	Right Atrium	heart
10	chr11:121103000-121106800	Weak transcription	Fetal Intestine Large	intestine
11	chr11:121103000-121107400	Weak transcription	Gastric	stomach
12	chr11:121103000-121107600	Weak transcription	Pancreas	Pancrea
13	chr11:121103200-121105600	Weak transcription	Fetal Heart	heart
14	chr11:121104200-121105600	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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