Variant report

Variant	rs12278519
Chromosome Location	chr11:63388403-63388404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:63380134..63381907-chr11:63387073..63388722,2	K562	blood:
2	chr11:63380006..63382115-chr11:63388318..63389937,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176485	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs7123713	0.83[AMR][1000 genomes]
rs7123961	0.83[AMR][1000 genomes]
rs7129721	0.83[AMR][1000 genomes]
rs7130235	0.83[AMR][1000 genomes]
rs7131365	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63382000-63398400	Weak transcription	Small Intestine	intestine
2	chr11:63382200-63396400	Weak transcription	Spleen	Spleen
3	chr11:63382400-63389600	Weak transcription	A549	lung
4	chr11:63382400-63389800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr11:63382400-63389800	Weak transcription	Adipose Nuclei	Adipose
6	chr11:63382400-63389800	Weak transcription	Brain Anterior Caudate	brain
7	chr11:63382400-63389800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:63382400-63390000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr11:63382400-63393800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:63382400-63394200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr11:63382400-63396400	Weak transcription	Left Ventricle	heart
12	chr11:63382400-63398400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:63382400-63409800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr11:63385000-63389800	Weak transcription	HepG2	liver
15	chr11:63386200-63395600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr11:63386600-63388600	Weak transcription	Primary T cells from cord blood	blood
17	chr11:63387200-63391000	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr11:63387600-63389000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr11:63387800-63389600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr11:63387800-63389800	Weak transcription	Stomach Mucosa	stomach
21	chr11:63387800-63398400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr11:63388000-63390400	Weak transcription	K562	blood
23	chr11:63388000-63396000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr11:63388200-63391400	Enhancers	Placenta	Placenta
25	chr11:63388400-63388600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr11:63388400-63388600	Enhancers	Primary B cells from peripheral blood	blood
27	chr11:63388400-63388600	Enhancers	Fetal Muscle Leg	muscle
28	chr11:63388400-63388600	Enhancers	Fetal Thymus	thymus
29	chr11:63388400-63388800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:63388400-63388800	Weak transcription	Primary B cells from cord blood	blood
31	chr11:63388400-63388800	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr11:63388400-63389000	Enhancers	Primary T cells fromperipheralblood	blood
33	chr11:63388400-63389000	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr11:63388400-63389000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr11:63388400-63389000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr11:63388400-63389200	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr11:63388400-63389200	Enhancers	Thymus	Thymus
38	chr11:63388400-63389600	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr11:63388400-63389800	Enhancers	Primary neutrophils fromperipheralblood	blood
40	chr11:63388400-63390000	Weak transcription	Ovary	ovary

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