Variant report

Variant	rs12279193
Chromosome Location	chr11:24443570-24443571
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12274624	0.92[EUR][1000 genomes]
rs12276010	0.88[EUR][1000 genomes]
rs12289227	0.90[EUR][1000 genomes]
rs16912593	0.88[EUR][1000 genomes]
rs16912642	0.80[EUR][1000 genomes]
rs16912643	0.80[EUR][1000 genomes]
rs1996393	0.88[EUR][1000 genomes]
rs59946308	0.80[EUR][1000 genomes]
rs7105586	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7952535	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:54 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055026	chr11:24151133-24737122	Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1037744	chr11:24174588-24737122	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv467755	chr11:24407381-24527958	Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv553791	chr11:24407381-24527958	Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv897088	chr11:24419481-24543475	Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1833980	chr11:24435202-24452026	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
7	esv1836819	chr11:24435202-24452026	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
8	esv1836980	chr11:24435202-24452026	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
9	nsv553792	chr11:24435202-24452026	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
10	nsv553793	chr11:24435202-24452774	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
11	nsv553794	chr11:24435202-24537624	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv553795	chr11:24440965-24452026	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
13	nsv553796	chr11:24440965-24452774	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
14	esv1835900	chr11:24440965-24453054	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
15	esv1838619	chr11:24440965-24453054	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
16	nsv820228	chr11:24442960-24452279	Enhancers	n/a	n/a	inside rSNPs	n/a
17	esv3457941	chr11:24443001-24452427	Enhancers	n/a	n/a	inside rSNPs	n/a
18	esv13551	chr11:24443020-24452316	Enhancers	n/a	n/a	inside rSNPs	n/a
19	nsv820748	chr11:24443020-24452316	Enhancers	n/a	n/a	inside rSNPs	n/a
20	esv3457930	chr11:24443034-24452402	Enhancers	n/a	n/a	inside rSNPs	n/a
21	esv3457919	chr11:24443081-24452360	Enhancers	n/a	n/a	inside rSNPs	n/a
22	esv3457953	chr11:24443081-24452360	Enhancers	n/a	n/a	inside rSNPs	n/a
23	nsv825793	chr11:24443128-24452061	Enhancers	n/a	n/a	inside rSNPs	n/a
24	nsv825794	chr11:24443128-24452249	Enhancers	n/a	n/a	inside rSNPs	n/a
25	nsv825795	chr11:24443161-24452249	Enhancers	n/a	n/a	inside rSNPs	n/a
26	nsv825796	chr11:24443262-24452249	Enhancers	n/a	n/a	inside rSNPs	n/a
27	nsv553797	chr11:24443570-24447892	Enhancers	n/a	n/a	inside rSNPs	n/a
28	nsv553798	chr11:24443570-24448202	Enhancers	n/a	n/a	inside rSNPs	n/a
29	nsv553799	chr11:24443570-24448367	Enhancers	n/a	n/a	inside rSNPs	n/a
30	nsv553800	chr11:24443570-24449998	Enhancers	n/a	n/a	inside rSNPs	n/a
31	nsv553801	chr11:24443570-24450449	Enhancers	n/a	n/a	inside rSNPs	n/a
32	nsv553802	chr11:24443570-24450582	Enhancers	n/a	n/a	inside rSNPs	n/a
33	nsv553803	chr11:24443570-24451782	Enhancers	n/a	n/a	inside rSNPs	n/a
34	esv1839559	chr11:24443570-24451922	Enhancers	n/a	n/a	inside rSNPs	n/a
35	nsv553804	chr11:24443570-24451922	Enhancers	n/a	n/a	inside rSNPs	n/a
36	esv1835053	chr11:24443570-24452026	Enhancers	n/a	n/a	inside rSNPs	n/a
37	esv1835415	chr11:24443570-24452026	Enhancers	n/a	n/a	inside rSNPs	n/a
38	esv1835697	chr11:24443570-24452026	Enhancers	n/a	n/a	inside rSNPs	n/a
39	esv1836612	chr11:24443570-24452026	Enhancers	n/a	n/a	inside rSNPs	n/a
40	esv1836837	chr11:24443570-24452026	Enhancers	n/a	n/a	inside rSNPs	n/a
41	esv1837020	chr11:24443570-24452026	Enhancers	n/a	n/a	inside rSNPs	n/a
42	esv1837073	chr11:24443570-24452026	Enhancers	n/a	n/a	inside rSNPs	n/a
43	esv1838881	chr11:24443570-24452026	Enhancers	n/a	n/a	inside rSNPs	n/a
44	esv1842162	chr11:24443570-24452026	Enhancers	n/a	n/a	inside rSNPs	n/a
45	esv1842196	chr11:24443570-24452026	Enhancers	n/a	n/a	inside rSNPs	n/a
46	esv1842415	chr11:24443570-24452026	Enhancers	n/a	n/a	inside rSNPs	n/a
47	esv1842635	chr11:24443570-24452026	Enhancers	n/a	n/a	inside rSNPs	n/a
48	nsv553805	chr11:24443570-24452026	Enhancers	n/a	n/a	inside rSNPs	n/a
49	nsv553806	chr11:24443570-24452774	Enhancers	n/a	n/a	inside rSNPs	n/a
50	esv1834240	chr11:24443570-24475606	ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:24443000-24444200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:24443200-24443600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr11:24443200-24443600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:24443200-24443600	Enhancers	HMEC	breast
5	chr11:24443200-24444000	Enhancers	NHEK	skin

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