Variant report

Variant	rs12279399
Chromosome Location	chr11:101392289-101392290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11224873	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101387600-101400800	Weak transcription	Ovary	ovary
2	chr11:101391000-101392800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
3	chr11:101391200-101392800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
4	chr11:101391400-101392800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:101391600-101392400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
6	chr11:101391800-101392600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
7	chr11:101391800-101392600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:101391800-101392600	ZNF genes & repeats	Fetal Intestine Small	intestine
9	chr11:101391800-101393600	Enhancers	Fetal Intestine Large	intestine
10	chr11:101392000-101392400	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:101392000-101392600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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